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scnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00143
Bact-Virscnpilot_solids1_trim150_scaffold_46_prodigal-single.1__X__X__00143
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-96
Domain cluster:
rep: NC_007623.1__YP_418158.1__PPEV_gp125__00125__D246-309
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.60 | 31.0 | 3.68e-01 | 75.0% | 72.1% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.59 | 42.0 | 3.45e-01 | 73.9% | 39.6% |
| 1hciA04 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 38.0 | 3.53e-01 | 72.7% | 50.0% |
| 1b10A00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.59 | 35.0 | 3.40e-01 | 80.7% | 50.0% |
| 3smvA02 | 1.10.150.750 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.58 | 38.0 | 4.08e-01 | 81.8% | 76.6% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 41.0 | 4.13e-01 | 100.0% | 74.7% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.56 | 37.0 | 3.39e-01 | 73.9% | 50.0% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 36.0 | 3.71e-01 | 88.6% | 66.7% |
| 1b7eA02 | 1.10.740.10 | Mainly Alpha › Orthogonal Bundle › Transferase Inhibitor Protein From Tn5; Chain A, domain2 › Transferase Inhibitor Protein From Tn5; Chain | 0.56 | 48.0 | 4.26e-01 | 94.3% | 86.5% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 39.0 | 3.56e-01 | 73.9% | 80.5% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.55 | 35.0 | 3.56e-01 | 71.6% | 64.0% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 36.0 | 3.47e-01 | 70.5% | 57.4% |
| 4uw9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 37.0 | 3.87e-01 | 70.5% | 95.2% |
| 3spcA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 39.0 | 3.53e-01 | 76.1% | 78.7% |
| 3c8tA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.55 | 39.0 | 3.79e-01 | 81.8% | 68.0% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.54 | 38.0 | 3.57e-01 | 73.9% | 64.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 38.0 | 3.83e-01 | 87.5% | 73.9% |
| 2fb5A01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.53 | 34.0 | 3.63e-01 | 72.7% | 77.8% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.52 | 36.0 | 3.55e-01 | 73.9% | 64.3% |
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.52 | 43.0 | 3.58e-01 | 93.2% | 75.0% |
| 3rvyA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 36.0 | 3.45e-01 | 72.7% | 83.2% |
| 2iazA00 | 1.20.1500.10 | Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like | 0.52 | 36.0 | 3.39e-01 | 100.0% | 58.3% |
| 3wfwA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 37.0 | 3.29e-01 | 77.3% | 93.5% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.50 | 37.0 | 3.74e-01 | 100.0% | 79.5% |
| 1b0bA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 37.0 | 3.22e-01 | 83.0% | 48.9% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.50 | 34.0 | 3.57e-01 | 73.9% | 79.2% |
| 1owlA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 38.0 | 3.41e-01 | 80.7% | 91.9% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5021149 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.84 | 56.0 | 4.55e-01 | 84.1% | 38.7% |
| 3692351 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.67 | 41.0 | 3.32e-01 | 72.7% | 33.8% |
| 3577448 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.59 | 36.0 | 3.60e-01 | 71.6% | 58.4% |
| 3735607 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.59 | 37.0 | 3.85e-01 | 71.6% | 68.8% |
| 3168797 | 5001.1.1.190 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › NPR3 | 0.58 | 41.0 | 3.98e-01 | 73.9% | 94.9% |
| 4029168 | 4984.1.1.0 ↗ | alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain | 0.58 | 41.0 | 3.61e-01 | 73.9% | 50.0% |
| 3234742 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.58 | 39.0 | 3.95e-01 | 70.5% | 77.8% |
| 4612826 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.57 | 33.0 | 3.42e-01 | 71.6% | 61.3% |
| 5061943 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.56 | 38.0 | 3.44e-01 | 85.2% | 49.6% |
| 3210369 | 603.1.1.108 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27599 | 0.56 | 39.0 | 3.44e-01 | 72.7% | 49.2% |
| 3395749 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.56 | 38.0 | 3.31e-01 | 70.5% | 65.2% |
| 3734144 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 48.0 | 4.06e-01 | 100.0% | 86.5% |
| 4218046 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.55 | 48.0 | 3.41e-01 | 95.5% | 83.0% |
| 3828018 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 43.0 | 2.71e-01 | 85.2% | 34.1% |
| 4077943 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.54 | 46.0 | 3.46e-01 | 97.7% | 75.7% |
| 5013760 | 7014.1.1.0 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain | 0.54 | 39.0 | 3.63e-01 | 76.1% | 79.1% |
| 3536512 | 192.29.1.100 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4211 | 0.53 | 47.0 | 3.95e-01 | 98.9% | 90.7% |
| 3268584 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.53 | 47.0 | 3.33e-01 | 100.0% | 42.5% |
| 3957445 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 39.0 | 3.62e-01 | 81.8% | 71.3% |
| 4033102 | 632.5.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylocoagulase › Staphylocoagulase | 0.51 | 45.0 | 4.40e-01 | 100.0% | 100.0% |
| 3972755 | 601.1.2.99 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DAGK_prokar | 0.51 | 39.0 | 3.60e-01 | 89.8% | 62.7% |
| 3608541 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.51 | 34.0 | 2.95e-01 | 94.3% | 45.2% |
| 3592 | 632.12.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 | 0.50 | 37.0 | 3.70e-01 | 97.7% | 77.5% |
D2
high
residues 98-176
Domain cluster:
rep: IMGVR_UViG_3300007985_000016-3300007985-Ga0100381_100023213__D201-302
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02272.25 best | DHHA1 | 27.2 | 6.30e-06 | 63.3% | 35.3% |