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scnpilot_solids2_trim150_scaffold_133_prodigal-single.1__X__X__00022

Bact-Vir

scnpilot_solids2_trim150_scaffold_133_prodigal-single.1__X__X__00022

Identity

Kingdom:
phage

Quality

92.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-85
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 62.0 5.97e-01 100.0% 77.8%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 61.0 6.35e-01 100.0% 100.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 65.0 5.70e-01 100.0% 66.3%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 4.75e-01 100.0% 39.8%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 66.0 4.81e-01 100.0% 50.0%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 5.30e-01 100.0% 58.7%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 65.0 4.66e-01 100.0% 49.7%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.41e-01 98.2% 73.8%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.72 63.0 5.81e-01 100.0% 98.6%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 64.0 5.83e-01 100.0% 83.3%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 64.0 4.16e-01 100.0% 31.2%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 5.58e-01 100.0% 71.1%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.70 63.0 5.57e-01 100.0% 84.8%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 53.0 5.64e-01 100.0% 97.9%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.69 62.0 5.63e-01 100.0% 75.7%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 5.13e-01 100.0% 63.0%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 48.0 4.87e-01 83.6% 75.0%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.31e-01 100.0% 74.3%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 48.0 4.36e-01 83.6% 56.8%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 58.0 4.51e-01 100.0% 66.9%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 52.0 4.59e-01 85.5% 93.7%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 4.65e-01 100.0% 70.9%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 56.0 4.19e-01 100.0% 68.8%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.25e-01 100.0% 91.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 5.03e-01 100.0% 78.8%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 5.07e-01 100.0% 82.5%
5bv3D01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.63 47.0 3.74e-01 81.8% 85.7%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.39e-01 98.2% 100.0%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.62 52.0 4.26e-01 100.0% 50.0%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.62 51.0 3.64e-01 100.0% 29.3%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 51.0 4.18e-01 98.2% 60.6%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 47.0 3.79e-01 87.3% 77.5%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.59 49.0 3.75e-01 100.0% 49.0%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 46.0 4.63e-01 96.4% 89.3%
3fxzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 45.0 3.76e-01 85.5% 84.7%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.58 47.0 4.09e-01 100.0% 60.8%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 45.0 4.49e-01 94.5% 87.5%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 44.0 4.49e-01 96.4% 94.1%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 43.0 4.23e-01 89.1% 77.0%
3amuA02 2.40.50.1010 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 44.0 3.40e-01 89.1% 54.4%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.55e-01 100.0% 87.3%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 42.0 4.36e-01 96.4% 92.3%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 42.0 4.35e-01 96.4% 92.3%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 42.0 4.12e-01 96.4% 76.6%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 41.0 4.25e-01 96.4% 94.1%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 44.0 4.29e-01 96.4% 90.6%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.27e-01 100.0% 88.7%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.43e-01 90.9% 89.1%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.04e-01 100.0% 28.0%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.43e-01 94.5% 49.2%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.53 45.0 3.99e-01 100.0% 67.5%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.12e-01 100.0% 34.9%
1g44C04 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.51 35.0 3.72e-01 81.8% 95.2%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.20e-01 100.0% 56.8%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4002985 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 70.0 6.77e-01 100.0% 86.7%
3570369 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 67.0 5.64e-01 100.0% 56.7%
3500542 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 64.0 5.42e-01 100.0% 54.4%
3913782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 70.0 6.69e-01 100.0% 85.9%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 71.0 6.38e-01 100.0% 87.8%
3183093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 69.0 5.12e-01 100.0% 49.3%
3918299 4.1.1.376 ↗ beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.75 66.0 6.10e-01 100.0% 77.1%
3834563 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.75 68.0 5.93e-01 100.0% 73.8%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 64.0 6.11e-01 100.0% 81.5%
3476615 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 5.85e-01 100.0% 86.3%
3584555 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 66.0 6.13e-01 100.0% 85.7%
3447819 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 65.0 6.03e-01 100.0% 84.3%
3627576 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 6.23e-01 100.0% 92.3%
3624304 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 66.0 5.49e-01 100.0% 82.1%
3256053 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.73 65.0 5.49e-01 100.0% 61.1%
3709896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 66.0 5.65e-01 100.0% 77.6%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 66.0 5.57e-01 100.0% 75.6%
4017498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.03e-01 100.0% 76.3%
4358168 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 64.0 5.11e-01 100.0% 56.4%
3768347 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.73 65.0 6.13e-01 100.0% 89.2%
4018672 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.71 63.0 4.93e-01 100.0% 60.9%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 61.0 5.81e-01 100.0% 81.5%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.77e-01 100.0% 82.9%
3730835 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.70 61.0 5.17e-01 100.0% 57.9%
3521181 4.1.1.229 ↗ beta barrels › SH3 › SH3 › SH3 0.70 63.0 4.36e-01 100.0% 41.1%
3430260 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 61.0 3.67e-01 96.4% 35.9%
4445574 4.1.1.361 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_KDM3B, PWWP_KDM3B, DUF7030 0.70 61.0 4.02e-01 100.0% 29.8%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.69 61.0 5.11e-01 100.0% 63.2%
3460576 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.69 52.0 3.33e-01 89.1% 17.3%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 4.79e-01 100.0% 67.8%
3934655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.25e-01 100.0% 97.6%
3894324 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.68 53.0 5.01e-01 90.9% 70.8%
3484606 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 60.0 5.22e-01 100.0% 64.7%
3572649 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.68 60.0 5.32e-01 100.0% 95.0%
3728855 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.44e-01 100.0% 74.7%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 57.0 5.41e-01 100.0% 80.0%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 56.0 5.36e-01 100.0% 80.0%
3927213 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.65 57.0 5.31e-01 100.0% 78.6%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 55.0 5.25e-01 100.0% 80.0%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 55.0 5.23e-01 100.0% 80.0%
3599172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.23e-01 100.0% 80.0%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 4.93e-01 100.0% 75.0%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 57.0 5.38e-01 100.0% 83.1%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 56.0 5.35e-01 100.0% 83.1%
3496126 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.64 57.0 4.87e-01 100.0% 83.0%
4944212 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.64 55.0 4.67e-01 100.0% 59.1%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.54e-01 100.0% 57.9%
4671845 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.62 48.0 4.64e-01 94.5% 73.8%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 52.0 4.58e-01 100.0% 70.6%
4243071 3699.1.1.0 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.60 46.0 4.66e-01 96.4% 87.3%
3437430 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.60 46.0 4.43e-01 92.7% 73.8%
3792066 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 51.0 3.19e-01 100.0% 26.7%
3328685 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 44.0 4.28e-01 92.7% 73.8%
4456205 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 43.0 4.39e-01 96.4% 87.3%
4039571 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 44.0 4.43e-01 96.4% 87.3%
4114201 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 48.0 4.58e-01 96.4% 81.5%
5013328 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.56 46.0 4.51e-01 94.5% 91.7%
3235792 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 42.0 2.65e-01 81.8% 48.9%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.55 45.0 4.38e-01 100.0% 84.6%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.54 44.0 4.29e-01 100.0% 84.6%
5041849 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.54 40.0 4.08e-01 96.4% 87.3%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.54 44.0 4.24e-01 100.0% 84.6%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.53 43.0 4.22e-01 100.0% 84.6%
3421079 2003.1.2.102 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 0.53 45.0 2.97e-01 100.0% 47.1%
3698791 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.53 43.0 4.08e-01 96.4% 85.7%
3739762 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.53 46.0 3.62e-01 100.0% 92.5%
3927520 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.52 42.0 3.69e-01 96.4% 92.2%
1144165 11.1.1.294 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Herpes_gp350_B 0.51 43.0 3.21e-01 100.0% 57.9%