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scnpilot_solids2_trim150_scaffold_133_prodigal-single.1__X__X__00023
Bact-Virscnpilot_solids2_trim150_scaffold_133_prodigal-single.1__X__X__00023
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-137
Domain cluster:
rep: peptidyl-tRNA_hydrolase__YP_009447948__Flamingopox_virus_FGPVKD09__2059380__D17-122
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q7sA00 | 3.40.1490.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 | 0.77 | 62.0 | 6.64e-01 | 100.0% | 97.4% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 41.0 | 4.56e-01 | 76.5% | 81.0% |
| 3bm7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 39.0 | 4.35e-01 | 76.5% | 80.2% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 38.0 | 4.39e-01 | 100.0% | 88.5% |
| 4lbhA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.59 | 36.0 | 4.18e-01 | 100.0% | 86.2% |
| 2ftrA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 37.0 | 4.22e-01 | 100.0% | 84.5% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 38.0 | 4.32e-01 | 75.7% | 91.3% |
| 1a7gE00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 31.0 | 3.82e-01 | 100.0% | 89.0% |
| 3bn7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 4.19e-01 | 76.5% | 90.2% |
| 2rilA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 33.0 | 3.86e-01 | 76.5% | 85.3% |
| 3s1tA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 31.0 | 3.82e-01 | 100.0% | 92.5% |
| 3f44A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 43.0 | 3.73e-01 | 84.6% | 89.0% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 31.0 | 3.56e-01 | 100.0% | 77.2% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.52 | 30.0 | 3.75e-01 | 73.5% | 100.0% |
| 2ychA02 | 3.30.1490.300 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.52 | 25.0 | 3.43e-01 | 76.5% | 98.3% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.51 | 30.0 | 3.66e-01 | 99.3% | 95.0% |
| 6urtA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 31.0 | 3.67e-01 | 98.5% | 92.0% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.95e-01 | 100.0% | 90.4% |
| 2uv8A05 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 36.0 | 2.38e-01 | 74.3% | 19.3% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 36.0 | 3.92e-01 | 100.0% | 89.5% |
| 1p38A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 35.0 | 3.53e-01 | 78.7% | 69.5% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 37.0 | 4.04e-01 | 100.0% | 93.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946237 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.79 | 63.0 | 6.80e-01 | 100.0% | 98.3% |
| 5030351 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.79 | 62.0 | 6.75e-01 | 100.0% | 97.4% |
| 3990988 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.77 | 67.0 | 7.01e-01 | 100.0% | 100.0% |
| 1168094 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.64 | 40.0 | 4.77e-01 | 75.7% | 95.5% |
| 3727517 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.60 | 40.0 | 4.43e-01 | 77.9% | 87.6% |
| 3720562 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.59 | 39.0 | 4.40e-01 | 76.5% | 91.0% |
| 166322 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.58 | 38.0 | 4.36e-01 | 100.0% | 89.2% |
| 3734371 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.57 | 40.0 | 4.26e-01 | 77.9% | 83.5% |
| 3735153 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.57 | 44.0 | 4.75e-01 | 84.6% | 95.7% |
| 3635010 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 42.0 | 3.99e-01 | 75.7% | 85.4% |
| 4020396 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.57 | 33.0 | 3.93e-01 | 72.1% | 85.6% |
| 1680295 | 206.1.1.13 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase | 0.56 | 44.0 | 3.59e-01 | 83.1% | 80.1% |
| 5058378 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.56 | 37.0 | 4.21e-01 | 77.2% | 91.0% |
| 5053029 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 36.0 | 4.17e-01 | 74.3% | 92.6% |
| 3437421 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.55 | 40.0 | 4.23e-01 | 82.4% | 85.0% |
| 5041306 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.55 | 31.0 | 3.86e-01 | 76.5% | 92.5% |
| 3590830 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.53 | 36.0 | 4.14e-01 | 76.5% | 97.9% |
| 3593381 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 43.0 | 3.16e-01 | 89.0% | 65.4% |
| 3739841 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.53 | 36.0 | 3.92e-01 | 77.9% | 83.5% |
| 3744219 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.52 | 36.0 | 4.12e-01 | 77.9% | 96.0% |
| 4943826 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.52 | 37.0 | 3.40e-01 | 72.8% | 95.5% |
| 3638317 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 29.0 | 3.64e-01 | 98.5% | 96.0% |
| 3822124 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.52 | 35.0 | 3.95e-01 | 77.9% | 90.5% |
| 1780607 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 37.0 | 4.01e-01 | 100.0% | 90.4% |
| 3807249 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.51 | 35.0 | 3.90e-01 | 77.2% | 90.5% |
| 4221224 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.51 | 37.0 | 4.01e-01 | 100.0% | 93.6% |
| 5045726 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.51 | 31.0 | 3.70e-01 | 73.5% | 100.0% |
| 4258815 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.50 | 37.0 | 4.06e-01 | 100.0% | 96.4% |