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scnpilot_solids2_trim150_scaffold_133_prodigal-single.1__X__X__00122

Bact-Vir

scnpilot_solids2_trim150_scaffold_133_prodigal-single.1__X__X__00122

Identity

Kingdom:
phage

Quality

82.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-69
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14243.12 best R2K_3 33.1 8.60e-08 88.5% 25.1%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.77 67.0 5.76e-01 100.0% 62.1%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.71 61.0 4.97e-01 100.0% 52.5%
3cxgA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 45.0 3.61e-01 75.4% 73.8%
2lstA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 43.0 3.43e-01 75.4% 78.5%
2ec4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 42.0 3.11e-01 75.4% 72.5%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.57 38.0 3.37e-01 70.5% 98.9%
3nyiA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.54 42.0 3.24e-01 83.6% 84.7%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 37.0 2.77e-01 72.1% 47.0%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.53 41.0 3.30e-01 86.9% 82.3%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.52 36.0 3.71e-01 73.8% 77.2%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.52 35.0 2.87e-01 70.5% 93.0%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.78e-01 95.1% 32.5%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 43.0 3.48e-01 96.7% 54.9%
8bykA01 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.50 42.0 2.59e-01 100.0% 24.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1789279 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.77 66.0 4.77e-01 100.0% 34.5%
3959373 206.1.3.2 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GARS_A 0.72 62.0 4.93e-01 100.0% 56.9%
5025626 325.1.1.17 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › GARS_A 0.70 60.0 4.30e-01 100.0% 36.3%
3993950 2485.1.1.55 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 0.65 44.0 3.14e-01 72.1% 67.0%
3576909 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.63 45.0 3.27e-01 75.4% 60.0%
None — 0.62 50.0 3.22e-01 98.4% 41.3%
4376573 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.61 45.0 3.55e-01 78.7% 59.7%
4305203 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.59 45.0 3.65e-01 83.6% 90.8%
1806506 206.1.3.22 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GshA 0.58 50.0 4.42e-01 98.4% 76.1%
3776229 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 40.0 3.36e-01 75.4% 63.5%
3705025 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.57 44.0 3.45e-01 85.2% 96.3%
4004088 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.57 33.0 3.65e-01 72.1% 82.5%
5078431 604.2.1.1 ↗ alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.56 38.0 3.01e-01 72.1% 43.0%
4126985 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.55 44.0 3.53e-01 88.5% 89.5%
3254628 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.55 37.0 2.69e-01 70.5% 88.7%
4974371 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.54 39.0 2.87e-01 82.0% 62.0%
4944466 301.13.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.54 41.0 3.41e-01 86.9% 83.2%
1937542 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.52 42.0 3.32e-01 88.5% 86.5%
4944239 301.13.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.52 39.0 3.21e-01 86.9% 80.8%
3838591 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.52 35.0 2.66e-01 70.5% 84.7%
3709350 304.31.1.0 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.50 34.0 2.48e-01 70.5% 69.4%
3413597 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.50 38.0 2.41e-01 83.6% 24.3%