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serpin-like_protein

Euk-Vir

Lymphocystis_disease_virus_Sa

serpin-like_protein__YP_009342118__Lymphocystis_disease_virus_Sa__1898060

Identity

Accession:: YP_009342118 ↗
Protein ID:: serpin-like_protein
Kingdom:: euk

Quality

77.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Lymphocystivirus› Lymphocystis_disease_virus_Sa

TaxID: 1898060

Cluster

View cluster (68 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-109_190-247

PDB

Domain cluster: rep: Serpin_1__YP_009408115__Eptesipox_virus__1329402__D1-137_237-300

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00079.26 best	Serpin	54.2	2.00e-14	75.4%	25.4%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2h4pA01	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.91	87.0	7.41e-01	99.4%	94.0%
3ndaA01	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.90	87.0	7.47e-01	100.0%	94.6%
1as4A02	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.89	79.0	7.01e-01	91.0%	96.4%
1mtpA01	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.89	86.0	7.54e-01	99.4%	95.6%
1c8oA01	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.80	69.0	6.98e-01	89.2%	100.0%
1jmoA01	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.79	67.0	6.02e-01	89.8%	94.3%
3wa5B00	2.60.120.1690	Mainly Beta › Sandwich › Jelly Rolls ›	0.58	30.0	3.48e-01	78.4%	67.7%
2cy9B00	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.57	33.0	3.63e-01	81.4%	70.5%
1hxdA02	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.54	38.0	3.63e-01	71.9%	81.2%
1lg7A00	3.10.460.10	Alpha Beta › Roll › VSV matrix protein › VSV matrix protein	0.52	32.0	3.24e-01	94.6%	59.8%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2332800	4059.1.1.0 ↗	a+b complex topology › Serpins › Serpins › Serpins	0.90	87.0	6.66e-01	100.0%	96.4%
141145	4059.1.1.0 ↗	a+b complex topology › Serpins › Serpins › Serpins	0.90	87.0	6.42e-01	100.0%	87.4%
1289420	4059.1.1.0 ↗	a+b complex topology › Serpins › Serpins › Serpins	0.90	86.0	6.42e-01	100.0%	86.2%
4785457	4059.1.1.1 ↗	a+b complex topology › Serpins › Serpins › Serpins › Serpin	0.89	86.0	6.65e-01	99.4%	99.1%
2709787	4059.1.1.1 ↗	a+b complex topology › Serpins › Serpins › Serpins › Serpin	0.89	85.0	6.36e-01	98.8%	86.2%
4768829	4059.1.1.1 ↗	a+b complex topology › Serpins › Serpins › Serpins › Serpin	0.89	86.0	6.66e-01	99.4%	96.9%
154136	4059.1.1.0 ↗	a+b complex topology › Serpins › Serpins › Serpins	0.88	84.0	6.20e-01	99.4%	86.2%
4783841	4059.1.1.1 ↗	a+b complex topology › Serpins › Serpins › Serpins › Serpin	0.85	80.0	6.30e-01	98.2%	100.0%
2410174	4059.1.1.0 ↗	a+b complex topology › Serpins › Serpins › Serpins	0.84	79.0	6.40e-01	98.2%	99.3%
3884771	4059.1.1.1 ↗	a+b complex topology › Serpins › Serpins › Serpins › Serpin	0.81	74.0	5.51e-01	95.2%	93.9%
2077183	4059.1.1.0 ↗	a+b complex topology › Serpins › Serpins › Serpins	0.81	73.0	5.52e-01	95.2%	95.4%
3899510	4059.1.1.1 ↗	a+b complex topology › Serpins › Serpins › Serpins › Serpin	0.80	73.0	5.44e-01	95.2%	93.9%
5029814	328.1.1.1 ↗	a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba	0.57	23.0	3.78e-01	71.9%	100.0%
3608188	331.3.1.0 ↗	a+b two layers › TBP-like › Bet v1-like › Bet v1-like	0.54	41.0	3.51e-01	78.4%	74.1%
3622783	11.12.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like	0.51	44.0	3.96e-01	92.2%	91.1%
3261437	331.3.1.0 ↗	a+b two layers › TBP-like › Bet v1-like › Bet v1-like	0.50	35.0	3.68e-01	78.4%	78.0%

D2 high residues 116-189

PDB

Domain cluster: rep: hypothetical_protein_KM759_gp021__YP_010087894__Lymphocystis_disease_virus_4__2704413__D117-187

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00079.26 best	Serpin	28.7	1.10e-06	87.8%	14.1%