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serpin_family_protein

Euk-Vir

Turkeypox_virus

serpin_family_protein__YP_009177042__Turkeypox_virus__336486

Identity

Accession:
YP_009177042 ↗
Protein ID:
serpin_family_protein
Kingdom:
euk

Quality

80.7 mean pLDDT

Cluster

View cluster (68 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-135
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1as4A02 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.89 85.0 6.73e-01 100.0% 72.6%
2h4pA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.88 84.0 6.41e-01 100.0% 66.5%
4if8B01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.87 82.0 6.16e-01 100.0% 59.7%
4p0fA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.87 82.0 6.54e-01 100.0% 70.3%
1attB02 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.86 81.0 6.18e-01 100.0% 65.1%
5inwA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.86 81.0 6.47e-01 100.0% 69.8%
1jrrA02 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.85 80.0 6.40e-01 100.0% 71.5%
3ndaA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.85 80.0 6.20e-01 100.0% 67.4%
1mtpA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.84 79.0 6.27e-01 100.0% 67.5%
3le2A01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.84 79.0 6.16e-01 100.0% 71.6%
1wz9A01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.83 78.0 6.26e-01 100.0% 72.9%
3pzfA02 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.83 64.0 5.37e-01 79.3% 72.8%
1ovaA02 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.83 77.0 6.07e-01 100.0% 74.9%
3stoA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.83 77.0 6.17e-01 100.0% 74.1%
1i99I01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.82 64.0 5.45e-01 81.8% 70.8%
3ozqA02 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.82 63.0 5.47e-01 79.3% 75.6%
3f1sA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.82 77.0 6.05e-01 100.0% 68.9%
2peeA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.82 76.0 5.98e-01 100.0% 64.7%
1jmoA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.81 75.0 6.04e-01 100.0% 73.6%
4dteA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.81 64.0 5.40e-01 81.8% 71.1%
4au2B01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.81 76.0 6.11e-01 100.0% 68.3%
2r9yA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.81 75.0 6.09e-01 100.0% 70.3%
4r9iA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.81 75.0 5.65e-01 100.0% 57.2%
2wxwA02 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.79 60.0 4.98e-01 79.3% 71.5%
1imvA02 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.78 72.0 5.98e-01 100.0% 76.2%
5c98A01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.78 71.0 5.81e-01 100.0% 73.2%
2oayA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.74 69.0 5.89e-01 100.0% 66.0%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 28.0 3.84e-01 99.2% 87.9%
2iw5B00 1.20.58.1880 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 31.0 3.01e-01 95.0% 44.4%
1uujA00 1.20.960.30 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.58 29.0 3.53e-01 81.0% 73.7%
1vm6A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 33.0 3.75e-01 71.1% 85.5%
1ignB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 34.0 3.77e-01 97.5% 83.7%
3fysA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.52 40.0 3.97e-01 81.8% 100.0%
4x9xA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.52 39.0 4.01e-01 81.0% 100.0%
3kizA01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.50 40.0 3.82e-01 84.3% 94.3%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.50 35.0 3.72e-01 73.6% 82.2%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3478193 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.87 82.0 6.44e-01 100.0% 71.2%
3432147 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.87 81.0 5.44e-01 100.0% 42.4%
3489562 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.86 80.0 5.45e-01 100.0% 42.0%
3547737 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.85 79.0 5.43e-01 100.0% 42.3%
3404796 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.84 79.0 5.45e-01 100.0% 43.2%
4768829 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.84 79.0 5.66e-01 100.0% 48.3%
154755 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.84 79.0 5.39e-01 100.0% 41.1%
138212 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.84 79.0 5.34e-01 100.0% 43.0%
3925504 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.83 78.0 5.39e-01 100.0% 43.6%
358183 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.83 78.0 5.37e-01 100.0% 42.4%
3395896 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.83 78.0 5.35e-01 100.0% 42.9%
3917472 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.83 77.0 5.31e-01 100.0% 40.1%
2709787 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.83 77.0 5.36e-01 100.0% 43.9%
3437937 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.82 75.0 5.12e-01 97.5% 40.3%
4067074 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.82 76.0 5.24e-01 100.0% 43.2%
4492961 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.82 76.0 5.26e-01 100.0% 42.4%
4199509 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.81 75.0 5.30e-01 100.0% 45.7%
166524 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.81 75.0 5.24e-01 100.0% 42.2%
86481 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.81 75.0 5.20e-01 100.0% 42.6%
364017 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.81 76.0 5.21e-01 100.0% 41.0%
7646 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.81 75.0 5.18e-01 100.0% 42.6%
141146 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.80 75.0 5.21e-01 100.0% 43.4%
3404927 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.80 74.0 5.14e-01 100.0% 43.8%
3401003 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.80 74.0 5.04e-01 100.0% 41.9%
1883933 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.80 74.0 5.10e-01 100.0% 40.2%
4539644 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.79 74.0 5.19e-01 100.0% 42.0%
1885705 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.78 71.0 5.04e-01 100.0% 44.8%
3957979 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.77 72.0 5.22e-01 100.0% 43.5%
3800247 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.76 69.0 4.74e-01 100.0% 46.2%
3243185 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.76 70.0 4.74e-01 100.0% 46.7%
3402664 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.75 69.0 4.90e-01 100.0% 45.1%
3547439 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.74 70.0 5.26e-01 100.0% 53.6%
3621630 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.73 68.0 4.74e-01 100.0% 40.6%
5026411 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.61 29.0 3.64e-01 90.9% 74.3%
3956250 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.60 27.0 3.92e-01 97.5% 100.0%
3968945 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.59 28.0 3.94e-01 97.5% 98.2%
4007503 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.58 27.0 3.75e-01 95.9% 100.0%
4009138 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.56 29.0 3.76e-01 87.6% 96.7%
3387591 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.55 31.0 3.90e-01 90.9% 100.0%
4940238 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.55 31.0 3.74e-01 70.2% 88.0%
3481136 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 3.23e-01 87.6% 56.1%
D2 medium residues 146-242_323-344
PDB
Domain cluster: rep: serpin_family_protein__YP_009447959__Flamingopox_virus_FGPVKD09__2059380__D135-230