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sigma-1_protein
Euk-VirMammalian_orthoreovirus_3
sigma-1_protein__YP_003199424__Mammalian_orthoreovirus_3__538123
Identity
- Accession:
- YP_003199424 ↗
- Protein ID:
- sigma-1_protein
- Kingdom:
- euk
Quality
66.4
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Spinareoviridae›
Orthoreovirus›
Mammalian_orthoreovirus_3
TaxID: 538123
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-167
Domain cluster:
rep: M35825.1__AAA32595.1__X__00001__D13-169
D2
medium
residues 192-241
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gu4A01 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.68 | 47.0 | 5.06e-01 | 74.0% | 90.7% |
| 3s6xA01 | 6.20.10.20 | Special › Other non-globular › Laminin › | 0.65 | 48.0 | 4.42e-01 | 86.0% | 59.4% |
| 3s6xC03 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.64 | 44.0 | 4.74e-01 | 72.0% | 92.5% |
| 1d8jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 33.0 | 2.88e-01 | 72.0% | 38.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2327461 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.70 | 56.0 | 5.04e-01 | 90.0% | 63.9% |
| 1152880 | 53.1.1.2 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Reo_sigma1 | 0.67 | 47.0 | 4.33e-01 | 74.0% | 60.0% |
| 2321116 | 53.1.1.0 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral | 0.67 | 52.0 | 4.62e-01 | 92.0% | 57.1% |
| 1833577 | 53.1.1.3 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Reo_sigmaC_M | 0.57 | 41.0 | 3.66e-01 | 78.0% | 47.4% |
| 4634739 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.57 | 39.0 | 3.99e-01 | 74.0% | 94.0% |
| 1080995 | 53.1.1.3 ↗ | beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › Reo_sigmaC_M | 0.57 | 41.0 | 4.24e-01 | 76.0% | 82.2% |
| 3883215 | 389.6.1.4 ↗ | few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › GF_recep_IV | 0.52 | 40.0 | 2.40e-01 | 94.0% | 13.7% |
D3
medium
residues 390-448