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sigma-NS_protein
Euk-VirMammalian_orthoreovirus_3
sigma-NS_protein__YP_003199426__Mammalian_orthoreovirus_3__538123
Identity
- Accession:
- YP_003199426 ↗
- Protein ID:
- sigma-NS_protein
- Kingdom:
- euk
Quality
77.3
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Spinareoviridae›
Orthoreovirus›
Mammalian_orthoreovirus_3
TaxID: 538123
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 174-365
Domain cluster:
rep: Sigma_NS__YP_009246470__Mahlapitsi_orthoreovirus__2170064__D179-246_283-370
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01518.22 best | PolyG_pol | 290.5 | 2.20e-86 | 100.0% | 51.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3354384 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.64 | 38.0 | 4.42e-01 | 79.7% | 81.5% |
| 3311111 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.59 | 36.0 | 4.09e-01 | 81.2% | 79.0% |
| 4278431 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.51 | 28.0 | 3.16e-01 | 73.4% | 66.7% |
D2
medium
residues 1-97
D3
medium
residues 98-170
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01518.22 best | PolyG_pol | 101.1 | 7.90e-29 | 100.0% | 20.5% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.69 | 43.0 | 4.73e-01 | 80.8% | 78.0% |
| 2l2dA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 42.0 | 4.27e-01 | 80.8% | 63.0% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 41.0 | 4.35e-01 | 79.5% | 69.7% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 44.0 | 4.60e-01 | 93.2% | 79.1% |
| 3ui3A02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 33.0 | 3.02e-01 | 89.0% | 40.8% |
| 5ejdA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.59 | 33.0 | 3.35e-01 | 90.4% | 53.3% |
| 5c0yA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.56 | 38.0 | 3.59e-01 | 72.6% | 71.0% |
| 7qv0F01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.53 | 37.0 | 3.67e-01 | 75.3% | 66.7% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 29.0 | 2.92e-01 | 83.6% | 54.2% |
| 4bjqA00 | 1.10.150.770 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 35.0 | 3.48e-01 | 94.5% | 67.9% |
| 6lkvA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.50 | 41.0 | 3.38e-01 | 94.5% | 49.6% |
| 2l22A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.50 | 35.0 | 3.37e-01 | 89.0% | 61.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3240717 | 103.1.1.4 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TAP_C | 0.68 | 41.0 | 4.79e-01 | 78.1% | 88.0% |
| 4001580 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.67 | 41.0 | 5.00e-01 | 71.2% | 100.0% |
| 3594075 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.64 | 40.0 | 3.87e-01 | 94.5% | 56.2% |
| 2057229 | 101.1.4.23 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MqsA_antitoxin | 0.60 | 44.0 | 4.54e-01 | 79.5% | 97.1% |
| 4548652 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.56 | 46.0 | 3.36e-01 | 91.8% | 84.8% |
| 4956886 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.51 | 41.0 | 3.38e-01 | 89.0% | 89.3% |