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sigma_B
Euk-VirBush_viper_reovirus
sigma_B__YP_009020576__Bush_viper_reovirus__1462685
Identity
- Accession:
- YP_009020576 ↗
- Protein ID:
- sigma_B
- Kingdom:
- euk
Quality
71.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-86_302-348
Domain cluster:
rep: VP7__YP_001837104__American_grass_carp_reovirus__465447__D1-99_213-261
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00979.23 best | Reovirus_cap | 83.9 | 1.80e-23 | 64.3% | 21.2% |
D2
high
residues 94-298
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fn9A02 | 3.90.1320.10 | Alpha Beta › Alpha-Beta Complex › Outer-capsid protein sigma 3, large lobe › Outer-capsid protein sigma 3, large lobe | 0.61 | 55.0 | 5.31e-01 | 99.5% | 86.2% |
| 1zpwX00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 19.0 | 2.86e-01 | 94.1% | 64.6% |