sigma_NS

Euk-Vir

Broome_virus

sigma_NS__YP_003717779__Broome_virus__667093

Identity

82.7 mean pLDDT

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Spinareoviridae› Orthoreovirus› Broome_reovirus

TaxID: 667093

View cluster (11 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-100_136-174_253-334

PDB

Domain cluster: rep: Sigma_NS__YP_009246470__Mahlapitsi_orthoreovirus__2170064__D22-178_247-282

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01518.22 best	PolyG_pol	45.4	6.70e-12	48.3%	24.6%
PF01518.22	PolyG_pol	86.1	2.90e-24	42.4%	23.2%

D2 medium residues 175-252_335-368

PDB

Domain cluster: rep: Sigma_NS__YP_009246470__Mahlapitsi_orthoreovirus__2170064__D179-246_283-370

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01518.22 best	PolyG_pol	75.1	6.50e-21	70.5%	20.8%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8d3lA01	3.100.10.20	Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain	0.73	25.0	2.83e-01	94.6%	39.8%
7mi4A02	3.100.10.20	Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain	0.73	25.0	3.06e-01	93.8%	47.3%
7kfuC01	3.100.10.20	Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain	0.70	24.0	2.98e-01	94.6%	46.7%
2i8dA01	3.90.1150.200	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 ›	0.61	29.0	3.40e-01	97.3%	63.0%
2czrA01	3.40.1350.70	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain	0.54	25.0	2.64e-01	99.1%	44.3%
3igfA02	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	23.0	2.78e-01	96.4%	58.1%
5yrzB00	3.30.920.30	Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein.	0.52	22.0	2.90e-01	94.6%	70.7%
4uoiC00	3.30.160.890	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C	0.50	20.0	2.81e-01	82.1%	72.5%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3839444	241.9.1.2 ↗	a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655	0.63	29.0	2.90e-01	97.3%	41.7%
4954638	241.9.1.2 ↗	a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655	0.61	29.0	2.98e-01	99.1%	44.7%
4971298	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.58	24.0	2.96e-01	94.6%	58.7%
4950889	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.53	23.0	2.80e-01	94.6%	58.7%
4968717	319.1.1.4 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20	0.52	24.0	2.86e-01	76.8%	62.7%