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sigma_NS
Euk-VirBush_viper_reovirus
sigma_NS__YP_009020577__Bush_viper_reovirus__1462685
Identity
- Accession:
- YP_009020577 ↗
- Protein ID:
- sigma_NS
- Kingdom:
- euk
Quality
73.7
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Spinareoviridae›
Orthoreovirus›
Bush_viper_reovirus
TaxID: 1462685
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 53-174
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01518.22 best | PolyG_pol | 43.5 | 2.60e-11 | 100.0% | 32.0% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tzlA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.54 | 35.0 | 3.74e-01 | 97.5% | 76.0% |
| 3bjdA01 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.50 | 29.0 | 3.35e-01 | 91.8% | 78.4% |
| 4bojA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.50 | 38.0 | 2.82e-01 | 80.3% | 88.1% |
D2
medium
residues 182-262
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01518.22 best | PolyG_pol | 86.1 | 2.90e-24 | 100.0% | 21.6% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.57 | 28.0 | 2.73e-01 | 72.8% | 39.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3272592 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.58 | 39.0 | 2.99e-01 | 70.4% | 54.6% |
| 4483977 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.55 | 35.0 | 3.30e-01 | 100.0% | 53.0% |
D3
medium
residues 263-370
Domain cluster:
rep: NS38__YP_001837103__American_grass_carp_reovirus__465447__D253-350
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01518.22 best | PolyG_pol | 84.6 | 8.20e-24 | 99.1% | 29.2% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8d3lA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.69 | 27.0 | 3.01e-01 | 98.1% | 43.2% |
| 4n06A01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.68 | 27.0 | 3.11e-01 | 98.1% | 47.6% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 28.0 | 3.28e-01 | 78.7% | 70.3% |
| 5ejrA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 32.0 | 3.66e-01 | 97.2% | 83.7% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.65 | 45.0 | 3.34e-01 | 70.4% | 33.7% | |
| 4971298 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.59 | 29.0 | 3.45e-01 | 74.1% | 68.0% |
| 3648594 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.57 | 27.0 | 2.82e-01 | 100.0% | 45.0% |
| 4934918 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.56 | 28.0 | 3.42e-01 | 73.1% | 72.9% |
| 4980090 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.56 | 27.0 | 3.14e-01 | 71.3% | 61.3% |
| 4954496 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.55 | 29.0 | 3.26e-01 | 93.5% | 66.3% |
| 4950889 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.55 | 28.0 | 3.25e-01 | 75.0% | 68.0% |
| 3451821 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.53 | 37.0 | 2.59e-01 | 73.1% | 96.6% |
| 3949940 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.52 | 28.0 | 3.16e-01 | 75.0% | 65.9% |
| 3512465 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.52 | 37.0 | 3.61e-01 | 73.1% | 94.2% |
| 3198611 | 148.1.3.195 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PPP4R2 | 0.52 | 35.0 | 3.81e-01 | 70.4% | 92.0% |
| 4314521 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.51 | 37.0 | 3.69e-01 | 76.9% | 95.7% |