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single-stranded_DNA-binding_protein
Euk-VirHuman_alphaherpesvirus_3
single-stranded_DNA-binding_protein__NP_040152__Human_alphaherpesvirus_3__10335
Identity
- Accession:
- NP_040152 ↗
- Protein ID:
- single-stranded_DNA-binding_protein
- Kingdom:
- euk
Quality
76.3
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Human_alphaherpesvirus_3
TaxID: 10335
Cluster
View cluster (33 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-13_43-86_173-219_727-761
Domain cluster:
rep: single-stranded_DNA-binding_protein__YP_009137104__Human_alphaherpesvirus_1__10298__D62-87_723-767
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00747.23 best | Viral_DNA_bp | 41.9 | 3.00e-11 | 40.3% | 4.3% |
D2
medium
residues 14-42_87-172_220-283
Domain cluster:
rep: major_DNA_binding_protein__NP_042934__Human_betaherpesvirus_6A__32603__D1-185
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00747.23 best | Viral_DNA_bp | 117.2 | 5.50e-34 | 50.8% | 7.8% |
| PF00747.23 | Viral_DNA_bp | 76.9 | 8.00e-22 | 36.9% | 5.6% |
D3
medium
residues 318-356_652-726
Domain cluster:
rep: single-stranded_DNA-binding_protein__YP_164472__Cercopithecine_alphaherpesvirus_2__10317__D356-374_532-549_656-731_769-775
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00747.23 best | Viral_DNA_bp | 67.3 | 6.80e-19 | 68.4% | 7.1% |
| PF00747.23 | Viral_DNA_bp | 31.4 | 4.60e-08 | 36.0% | 3.5% |
D4
medium
residues 357-557
Domain cluster:
rep: single-stranded_DNA-binding_protein__YP_009046527__Falconid_herpesvirus_1__1510155__D371-400_460-542_936-982
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00747.23 best | Viral_DNA_bp | 270.3 | 3.30e-80 | 100.0% | 17.8% |
D5
medium
residues 558-651_786-1024
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00747.23 best | Viral_DNA_bp | 283.3 | 3.80e-84 | 71.8% | 20.2% |
| PF00747.23 | Viral_DNA_bp | 76.8 | 9.00e-22 | 29.1% | 8.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oikA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.51 | 16.0 | 2.46e-01 | 89.5% | 63.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3262355 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.52 | 17.0 | 3.08e-01 | 76.9% | 97.8% |
| 3988293 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 21.0 | 2.74e-01 | 82.3% | 61.6% |
D6
medium
residues 1025-1135