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single-stranded_DNA-binding_protein

Euk-Vir

Gallid_alphaherpesvirus_3

single-stranded_DNA-binding_protein__NP_066861__Gallid_alphaherpesvirus_3__35250

Identity

Accession:: NP_066861 ↗
Protein ID:: single-stranded_DNA-binding_protein
Kingdom:: euk

Quality

72.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Gallid_alphaherpesvirus_3

TaxID: 35250

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1068-1133

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_182358__Gallid_alphaherpesvirus_1__10386__D872-948

D2 medium residues 1-247_724-763

PDB

Domain cluster: rep: ORF6__YP_001129352__Human_gammaherpesvirus_8__37296__D13-252_683-721

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	240.2	4.00e-71	90.2%	21.0%

D3 medium residues 248-280_308-330

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3lxrF00	1.10.4120.20	Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold ›	0.72	62.0	4.42e-01	100.0%	75.1%
1b3qA01	1.10.287.560	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain	0.67	47.0	4.51e-01	87.5%	66.1%
2b5dX02	1.20.1430.10	Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain	0.66	47.0	3.66e-01	75.0%	43.0%
2ficB00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.60	48.0	3.20e-01	83.9%	24.9%
4lp8A01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.60	50.0	4.10e-01	92.9%	100.0%
2copA00	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.59	41.0	3.30e-01	73.2%	63.3%
1wazA00	1.10.287.910	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › bacterial mercury transporter, merf	0.59	38.0	4.20e-01	82.1%	82.6%
4bujE03	1.10.3380.30	Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold ›	0.58	46.0	3.05e-01	85.7%	34.1%
3itfA00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.58	43.0	3.37e-01	80.4%	39.6%
1qv9A02	6.10.140.120	Special › Helix non-globular › Helix Hairpins ›	0.56	47.0	3.82e-01	91.1%	72.8%
4mo7A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	44.0	3.33e-01	100.0%	56.3%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5003923	5042.1.1.1 ↗	extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA	0.71	50.0	4.60e-01	73.2%	82.9%
3743731	3615.1.1.0 ↗	alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain	0.69	49.0	3.27e-01	75.0%	21.9%
2779092	864.1.1.2 ↗	a+b two layers › DLC › DLC › DLC › Tctex-1	0.62	42.0	3.36e-01	71.4%	44.7%
5008182	2006.1.4.2 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN	0.59	49.0	3.59e-01	89.3%	54.5%
3283505	4168.1.1.0 ↗	alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain	0.59	49.0	4.30e-01	98.2%	64.4%
3287822	2002.1.1.16 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase	0.56	45.0	2.76e-01	96.4%	14.7%
3642946	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.55	47.0	4.24e-01	96.4%	95.0%
3712866	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.55	44.0	3.54e-01	87.5%	45.5%
3491163	864.1.1.2 ↗	a+b two layers › DLC › DLC › DLC › Tctex-1	0.54	44.0	3.53e-01	98.2%	90.6%
3695522	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.53	41.0	3.11e-01	89.3%	68.0%
4153998	306.7.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N	0.52	41.0	3.35e-01	94.6%	70.0%
4638127	306.7.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N	0.52	42.0	3.41e-01	94.6%	73.0%

D4 medium residues 331-389_402-532_909-964_986-1041

PDB

D5 medium residues 801-883

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	75.1	2.80e-21	100.0%	6.8%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1urjA02	1.20.190.40	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Viral ssDNA binding protein, head domain	0.96	93.0	6.72e-01	100.0%	42.6%
2qksA01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.62	50.0	4.65e-01	89.2%	80.2%
2gutA00	1.10.246.20	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain	0.61	37.0	3.81e-01	85.5%	63.6%
2vixA03	1.20.1280.240	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.57	46.0	4.19e-01	88.0%	75.2%
2r8rA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	43.0	3.24e-01	88.0%	98.6%
3cjhI00	1.10.287.810	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains	0.53	31.0	3.80e-01	88.0%	90.7%
5fb0A02	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.51	43.0	3.89e-01	92.8%	91.1%
1pjrA04	1.10.486.10	Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4	0.51	43.0	3.63e-01	92.8%	86.4%
5n17A01	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.51	41.0	3.87e-01	91.6%	98.1%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
137172	192.10.1.2 ↗	alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › DksA-like_N	0.63	47.0	4.80e-01	79.5%	86.3%
4990303	304.41.1.1 ↗	a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N	0.59	41.0	3.43e-01	72.3%	97.2%
4226115	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.56	43.0	3.20e-01	85.5%	85.3%
5024220	601.2.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes	0.54	37.0	3.44e-01	91.6%	56.2%
3267852	1128.1.1.1 ↗	alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR	0.54	41.0	4.25e-01	90.4%	85.0%
1346255	6140.1.1.1 ↗	alpha superhelices › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Sld3_STD	0.54	39.0	3.28e-01	75.9%	92.2%
3985954	218.5.1.1 ↗	a+b two layers › Enolase-N/ribosomal protein › Uncharacterized protein › Uncharacterized protein › DUF1116	0.53	41.0	3.39e-01	84.3%	93.8%
3735032	5050.1.1.1 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr	0.52	40.0	3.00e-01	84.3%	83.0%