single-stranded_DNA-binding_protein

Euk-Vir

Meleagrid_alphaherpesvirus_1

single-stranded_DNA-binding_protein__NP_073323__Meleagrid_alphaherpesvirus_1__37108

Identity

73.8 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Meleagrid_alphaherpesvirus_1

TaxID: 37108

View cluster (33 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-15_51-87_157-174_189-220_721-763

PDB

Domain cluster: rep: JM5__YP_238308__Macaca_fuscata_rhadinovirus__272551__D62-101_150-211_236-257_687-715

D2 medium residues 16-50_88-109_132-156_175-188_221-236

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009046527__Falconid_herpesvirus_1__1510155__D17-47_130-150_215-247

D3 medium residues 110-131_237-282_449-492

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	29.9	1.30e-07	44.6%	4.1%
PF00747.23	Viral_DNA_bp	34.1	7.10e-09	41.1%	3.5%

D4 medium residues 308-337_377-448

PDB

D5 medium residues 528-655_765-800_880-890_987-1002

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009176908__Testudinid_alphaherpesvirus_3__2560801__D537-651_841-913

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	85.8	1.70e-24	67.5%	11.4%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1zpyA00	6.10.140.1960	Special › Helix non-globular › Helix Hairpins ›	0.61	28.0	3.96e-01	83.2%	90.1%
1urjA02	1.20.190.40	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Viral ssDNA binding protein, head domain	0.61	49.0	4.91e-01	82.7%	90.8%
2qywA00	1.20.58.400	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins	0.59	30.0	4.09e-01	75.4%	95.8%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.59	34.0	4.21e-01	77.5%	90.7%
2fzlA02	6.10.140.1180	Special › Helix non-globular › Helix Hairpins ›	0.55	19.0	3.18e-01	83.8%	91.9%
1wa8A00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.52	28.0	3.76e-01	82.2%	99.0%
2wa0A01	1.10.10.1200	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif	0.52	20.0	2.67e-01	75.4%	60.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3723690	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.54	33.0	3.93e-01	81.2%	90.4%
3679810	109.4.1.590 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NopRA1	0.52	19.0	2.64e-01	74.3%	63.2%

D6 medium residues 801-879_891-904

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__NP_066861__Gallid_alphaherpesvirus_3__35250__D801-883

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	72.7	1.50e-20	100.0%	8.6%

D7 medium residues 1034-1147

PDB