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single-stranded_DNA-binding_protein

Euk-Vir

Macacine_alphaherpesvirus_1

single-stranded_DNA-binding_protein__NP_851889__Macacine_alphaherpesvirus_1__10325

Identity

Accession:
NP_851889 ↗
Protein ID:
single-stranded_DNA-binding_protein
Kingdom:
euk

Quality

78.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Macacine_alphaherpesvirus_1

TaxID: 10325

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-113_141-243_727-778
PDB
Domain cluster: rep: ORF6__YP_001129352__Human_gammaherpesvirus_8__37296__D13-252_683-721
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF00747.23 best Viral_DNA_bp 119.7 9.50e-35 43.2% 9.0%
PF00747.23 Viral_DNA_bp 90.6 5.90e-26 38.4% 8.1%
PF00747.23 Viral_DNA_bp 27.8 5.50e-07 22.0% 4.7%
D2 medium residues 114-140_244-288
PDB
Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009046527__Falconid_herpesvirus_1__1510155__D97-129_248-282
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00747.23 best Viral_DNA_bp 43.3 1.20e-11 65.3% 3.9%
D3 medium residues 379-424_531-547_666-726_968-985
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00747.23 best Viral_DNA_bp 39.9 1.20e-10 52.8% 6.3%
PF00747.23 Viral_DNA_bp 31.1 5.60e-08 41.5% 4.3%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2auaA02 1.10.3800.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylation fold › ADP-ribosylation domain 0.52 30.0 3.59e-01 77.5% 85.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3210888 3281.1.2.4 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit 8 (Nqo8)-related › Acyl_transf_3 0.52 42.0 3.17e-01 87.3% 92.9%
D4 medium residues 439-530
PDB
Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009342374__Spheniscid_alphaherpesvirus_1__2560777__D464-535
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00747.23 best Viral_DNA_bp 113.3 8.70e-33 100.0% 7.6%
D5 medium residues 548-649
PDB
Domain cluster: rep: single-stranded_DNA-binding_protein__YP_164472__Cercopithecine_alphaherpesvirus_2__10317__D550-561_589-655
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00747.23 best Viral_DNA_bp 95.5 2.00e-27 100.0% 8.8%
D6 medium residues 1030-1136
PDB