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single-stranded_DNA-binding_protein

Euk-Vir

Gallid_alphaherpesvirus_2

single-stranded_DNA-binding_protein__YP_001033958__Gallid_alphaherpesvirus_2__10390

Identity

Accession:: YP_001033958 ↗
Protein ID:: single-stranded_DNA-binding_protein
Kingdom:: euk

Quality

74.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Gallid_alphaherpesvirus_2

TaxID: 10390

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1050-1134

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_182358__Gallid_alphaherpesvirus_1__10386__D872-948

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	25.4	2.90e-06	100.0%	6.9%

D2 medium residues 16-60_86-286

PDB

Domain cluster: rep: ORF6__YP_001129352__Human_gammaherpesvirus_8__37296__D13-252_683-721

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	236.1	7.00e-70	100.0%	23.4%

D3 medium residues 473-534_915-970

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	43.3	1.20e-11	61.9%	5.6%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2mabA00	1.10.10.1350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain	0.54	35.0	3.64e-01	79.7%	70.6%

D4 medium residues 535-650

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_182358__Gallid_alphaherpesvirus_1__10386__D560-645

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	79.8	1.10e-22	100.0%	10.3%

CATH (23)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2uv8A07	6.10.140.1410	Special › Helix non-globular › Helix Hairpins ›	0.72	42.0	4.81e-01	71.6%	77.6%
2x2vA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.69	41.0	5.08e-01	73.3%	100.0%
1e1dA02	1.20.1270.20	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.66	38.0	4.34e-01	81.9%	77.4%
2gk6A03	6.10.140.1240	Special › Helix non-globular › Helix Hairpins ›	0.63	29.0	4.26e-01	73.3%	100.0%
4dciA00	6.10.140.1110	Special › Helix non-globular › Helix Hairpins ›	0.63	42.0	3.93e-01	71.6%	54.4%
2wyhB04	1.20.1270.50	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain	0.62	41.0	4.34e-01	84.5%	76.2%
1kmiZ02	1.10.287.500	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.61	42.0	4.05e-01	70.7%	83.6%
6nyyE01	1.20.58.760	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41	0.61	45.0	3.97e-01	78.4%	82.1%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.59	49.0	4.91e-01	90.5%	89.0%
2dq0A01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.59	44.0	4.55e-01	77.6%	97.2%
2vkzA02	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.58	43.0	3.22e-01	75.9%	84.0%
3qo8A01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.57	42.0	4.40e-01	77.6%	98.1%
1i6zA00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.56	42.0	4.01e-01	77.6%	67.4%
1sr2A00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.56	30.0	3.09e-01	81.0%	50.0%
1z0pA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	35.0	4.16e-01	75.9%	100.0%
1qgtB00	1.10.4090.10	Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus	0.55	44.0	4.11e-01	84.5%	78.3%
2okuA00	1.20.120.470	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain	0.55	44.0	4.35e-01	85.3%	88.5%
3rh3A01	1.20.120.930	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829	0.55	44.0	4.27e-01	87.1%	81.2%
2oyyA00	6.10.80.10	Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP)	0.54	33.0	4.08e-01	87.1%	100.0%
3aqbB00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.53	46.0	3.43e-01	97.4%	87.2%
6vq6G02	1.20.1460.10	Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2	0.52	41.0	3.54e-01	83.6%	71.7%
2ce7B03	1.20.58.760	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41	0.52	43.0	3.82e-01	87.9%	82.7%
1h7cA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	36.0	3.83e-01	75.9%	99.0%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4971062	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.67	39.0	4.41e-01	70.7%	76.5%
3593724	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.66	45.0	4.41e-01	76.7%	64.0%
3321310	603.1.1.5 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N	0.66	46.0	4.54e-01	76.7%	68.3%
3643902	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.61	45.0	4.38e-01	77.6%	91.5%
1746028	7581.1.1.7 ↗	a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Ketoacyl-synt_C	0.59	43.0	3.08e-01	76.7%	65.9%
4964983	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.57	39.0	4.42e-01	73.3%	91.1%
3781350	5041.1.1.20 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › PF26669	0.57	41.0	4.08e-01	75.0%	85.0%
3493493	632.8.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	0.57	40.0	4.09e-01	71.6%	80.0%
3506153	190.1.1.1 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box	0.56	38.0	4.41e-01	87.9%	97.6%
4499889	192.24.1.1 ↗	alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RPC3_helical	0.55	42.0	4.62e-01	88.8%	98.9%
3705890	190.1.1.1 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box	0.55	40.0	4.37e-01	92.2%	92.6%
3519620	190.1.1.0 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box	0.55	46.0	4.79e-01	99.1%	96.4%
3538509	190.1.1.1 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box	0.55	37.0	3.91e-01	86.2%	77.1%
4344838	190.1.1.1 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box	0.54	37.0	4.28e-01	75.0%	100.0%
3746251	633.21.1.23 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20	0.53	44.0	3.97e-01	89.7%	72.5%
5076993	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.53	38.0	3.54e-01	74.1%	66.9%
3400200	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.52	38.0	3.79e-01	95.7%	71.2%

D5 medium residues 651-725_762-802_971-1038

PDB

D6 medium residues 803-914

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__NP_066861__Gallid_alphaherpesvirus_3__35250__D801-883

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	114.3	4.10e-33	100.0%	9.5%