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single-stranded_DNA-binding_protein

Euk-Vir

Equid_alphaherpesvirus_9

single-stranded_DNA-binding_protein__YP_002333512__Equid_alphaherpesvirus_9__55744

Identity

Accession:: YP_002333512 ↗
Protein ID:: single-stranded_DNA-binding_protein
Kingdom:: euk

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Equid_alphaherpesvirus_9

TaxID: 55744

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1058-1141

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_182358__Gallid_alphaherpesvirus_1__10386__D872-948

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	53.8	7.70e-15	100.0%	7.6%

D2 medium residues 1-229_317-409_674-711_734-768

PDB

Domain cluster: rep: ORF6__YP_001129352__Human_gammaherpesvirus_8__37296__D13-252_683-721

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	255.0	1.30e-75	58.5%	19.9%
PF00747.23	Viral_DNA_bp	70.6	6.60e-20	24.1%	8.3%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1sjrA00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.52	16.0	3.09e-01	81.3%	95.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7679	4174.1.1.1 ↗	a+b complex topology › N-terminal domain in viral ssDNA binding protein › N-terminal domain in viral ssDNA binding protein › N-terminal domain in viral ssDNA binding protein › Viral_DNA_bp	0.77	53.0	6.43e-01	76.2%	100.0%
3598810	862.1.1.0 ↗	a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain	0.52	20.0	2.88e-01	81.5%	72.2%

D3 medium residues 230-285

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_053076__Equid_alphaherpesvirus_1__10326__D230-280

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	51.0	5.60e-14	100.0%	4.9%

D4 medium residues 410-427_442-536

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	111.6	2.80e-32	100.0%	8.1%

D5 medium residues 537-562_660-673_917-929_968-1043

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	81.3	3.90e-23	73.6%	7.9%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3k8aB00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.54	37.0	4.14e-01	95.3%	89.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3510519	2.1.1.236 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29292	0.53	33.0	3.75e-01	99.2%	87.8%

D6 medium residues 563-659_840-916

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009176908__Testudinid_alphaherpesvirus_3__2560801__D537-651_841-913

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	47.5	6.20e-13	58.1%	8.2%
PF00747.23	Viral_DNA_bp	80.9	5.20e-23	43.1%	6.7%