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single-stranded_DNA-binding_protein

Euk-Vir

Human_herpesvirus_5

single-stranded_DNA-binding_protein__YP_002608262__Human_herpesvirus_5__10359

Identity

Accession:
YP_002608262 ↗
Protein ID:
single-stranded_DNA-binding_protein
Kingdom:
euk

Quality

76.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Human_betaherpesvirus_5

TaxID: 10359

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 600-670_817-910
PDB
Domain cluster: rep: single-stranded_DNA-binding_protein__YP_073781__Human_betaherpesvirus_7__10372__D539-623_810-829_841-855
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00747.23 best Viral_DNA_bp 134.2 4.10e-39 58.2% 8.3%
PF00747.23 Viral_DNA_bp 62.5 1.90e-17 43.6% 6.8%
D2 medium residues 1-259_742-785
PDB
Domain cluster: rep: ORF6__YP_001129352__Human_gammaherpesvirus_8__37296__D13-252_683-721
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00747.23 best Viral_DNA_bp 357.3 1.70e-106 85.8% 23.4%
D3 medium residues 501-515_786-798_924-935_971-1017
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00747.23 best Viral_DNA_bp 62.4 1.90e-17 62.1% 4.2%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.64 26.0 3.80e-01 92.0% 88.6%
4hceA00 2.40.50.860 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 48.0 4.23e-01 92.0% 89.1%
6lbtA01 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 49.0 4.14e-01 94.3% 81.7%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 47.0 4.41e-01 95.4% 93.7%
2vlgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 31.0 2.95e-01 96.6% 45.1%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 45.0 4.18e-01 92.0% 85.7%
4lrzE02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 28.0 2.82e-01 94.3% 41.5%
4pqxA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.53 41.0 4.46e-01 92.0% 97.3%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 4.33e-01 95.4% 93.1%
4pofA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 43.0 4.10e-01 92.0% 82.7%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 43.0 4.10e-01 93.1% 96.2%
3k6oA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.51 38.0 4.09e-01 90.8% 94.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3502540 1.1.1.14 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 0.61 35.0 3.51e-01 92.0% 54.4%
4089268 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 34.0 3.43e-01 98.9% 55.6%
4429397 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.56 48.0 3.84e-01 94.3% 95.9%
3690510 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.56 47.0 4.39e-01 95.4% 91.8%
3741507 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.55 45.0 4.33e-01 90.8% 93.0%
4137219 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.55 46.0 4.41e-01 93.1% 96.0%
4025160 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.54 46.0 4.09e-01 94.3% 87.2%
4938219 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 4.18e-01 92.0% 81.9%
5005288 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 46.0 3.82e-01 95.4% 82.6%
5061447 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 46.0 4.08e-01 96.6% 80.0%
3995685 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.53 44.0 4.13e-01 93.1% 91.7%
4084495 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.53 43.0 4.10e-01 90.8% 89.5%
3680255 2.1.1.67 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1_2 0.53 41.0 3.87e-01 92.0% 67.9%
3685866 2.1.1.81 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.52 44.0 4.12e-01 94.3% 94.5%
3604100 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 45.0 3.51e-01 94.3% 45.5%
5030363 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.52 43.0 4.03e-01 92.0% 80.0%
3473720 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.52 44.0 4.14e-01 95.4% 90.9%
4680392 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.51 43.0 4.00e-01 94.3% 88.2%
D4 medium residues 1063-1161
PDB
Domain cluster: rep: major_DNA_binding_protein__NP_050222__Human_betaherpesvirus_6B__32604__D1005-1084
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00747.23 best Viral_DNA_bp 89.2 1.60e-25 100.0% 8.9%