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single-stranded_DNA-binding_protein

Euk-Vir

Goose_adenovirus_4

single-stranded_DNA-binding_protein__YP_006383566__Goose_adenovirus_4__1193422

Identity

Accession:: YP_006383566 ↗
Protein ID:: single-stranded_DNA-binding_protein
Kingdom:: euk

Quality

70.5 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Goose_adenovirus_4

TaxID: 1193422

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 192-268_482-508

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009109584__Simian_adenovirus_DM-2014__1560346__D107-191_400-428

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02236.24 best	Viral_DNA_bi	88.0	6.20e-25	70.2%	91.1%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wb0X01	1.10.269.10	Mainly Alpha › Orthogonal Bundle › Adenovirus Single-stranded Dna-binding Protein, domain 1 › Adenovirus DNA-binding, N-terminal domain	0.93	89.0	8.49e-01	100.0%	92.3%
1aisB01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.60	44.0	4.50e-01	82.7%	81.8%
1qagA01	1.10.418.10	Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain	0.58	39.0	4.02e-01	90.4%	72.0%
8hdlA01	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.56	48.0	3.70e-01	96.2%	83.8%
3fggA00	1.10.3950.10	Mainly Alpha › Orthogonal Bundle › putative ecf-type sigma factor negative effector from bacillus cereus › putative ecf-type sigma factor negative effector from bacillus cereus	0.56	42.0	3.77e-01	79.8%	93.2%
1d8bA00	1.10.150.80	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain	0.55	37.0	4.07e-01	77.9%	88.9%
4c0eA01	1.25.40.790	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.55	46.0	3.31e-01	89.4%	47.3%
2aj4B03	1.20.1440.340	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.54	39.0	3.36e-01	74.0%	65.4%
6hwjA01	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.54	48.0	3.73e-01	100.0%	99.6%
5tk8A00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.52	44.0	3.62e-01	94.2%	70.7%
2hfiA00	1.20.120.440	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like	0.50	34.0	3.31e-01	83.7%	59.3%
3aqtA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	42.0	3.44e-01	91.3%	89.2%
2qksA01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.50	35.0	3.57e-01	90.4%	72.6%
1wbeA01	1.10.3520.10	Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein	0.50	36.0	2.99e-01	91.3%	41.6%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1118996	510.1.1.1 ↗	alpha bundles › Domain of early E2A DNA-binding protein, ADDBP › Domain of early E2A DNA-binding protein, ADDBP › Domain of early E2A DNA-binding protein, ADDBP › Viral_DNA_bi	0.94	66.0	7.10e-01	72.1%	88.9%
3991144	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.69	32.0	3.48e-01	70.2%	51.1%
3593944	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	41.0	3.12e-01	74.0%	63.6%
3650972	630.1.1.1 ↗	a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind	0.57	42.0	3.92e-01	76.9%	90.0%
4452148	101.1.10.3 ↗	alpha arrays › HTH › HTH › Cyclin-like › TFIIB	0.56	46.0	3.89e-01	91.3%	85.0%
3738994	168.1.1.1 ↗	alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7	0.53	43.0	3.54e-01	86.5%	51.8%
4978395	191.1.1.10 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_6	0.51	38.0	3.59e-01	77.9%	84.0%

D2 medium residues 378-481

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009047104__Pigeon_adenovirus_1__764030__D299-327_342-393

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03728.19 best	Viral_DNA_Zn_bi	68.3	9.80e-19	79.8%	79.6%