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single-stranded_DNA-binding_protein

Euk-Vir

Falconid_herpesvirus_1

single-stranded_DNA-binding_protein__YP_009046527__Falconid_herpesvirus_1__1510155

Identity

Accession:: YP_009046527 ↗
Protein ID:: single-stranded_DNA-binding_protein
Kingdom:: euk

Quality

76.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Falconid_herpesvirus_1

TaxID: 1510155

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-16_48-96_151-214_727-776

PDB

Domain cluster: rep: JM5__YP_238308__Macaca_fuscata_rhadinovirus__272551__D62-101_150-211_236-257_687-715

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	36.6	1.20e-09	37.4%	3.7%
PF00747.23	Viral_DNA_bp	51.0	5.60e-14	36.9%	5.4%

D2 medium residues 17-47_130-150_215-247

PDB

Domain cluster: representative

D3 medium residues 97-129_248-282

PDB

Domain cluster: representative

D4 medium residues 371-400_460-542_936-982

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	85.3	2.40e-24	58.8%	7.1%

D5 medium residues 543-592_917-935_983-1042

PDB

D6 medium residues 593-666_894-916

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	42.0	2.80e-11	77.3%	6.4%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4g80T00	1.20.120.350	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C	0.60	42.0	3.74e-01	89.7%	50.4%
4z5qA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.58	51.0	3.47e-01	97.9%	86.0%
2xkrA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.58	52.0	3.43e-01	99.0%	87.3%
1cmjA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.57	50.0	3.33e-01	96.9%	79.7%
2y39A00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.56	41.0	3.99e-01	86.6%	68.2%
2ra1A01	1.20.58.790	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	36.0	3.61e-01	88.7%	66.3%
3iieB03	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.53	36.0	3.91e-01	71.1%	84.7%
4b1bA00	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.52	41.0	2.66e-01	83.5%	27.2%
3mq1A01	1.20.58.970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	39.0	4.01e-01	85.6%	84.8%
2e9xB02	1.20.58.1020	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	44.0	4.30e-01	96.9%	86.2%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4218311	226.1.1.1 ↗	a+b two layers › POZ domain › POZ domain › POZ domain › BTB	0.63	31.0	2.52e-01	77.3%	23.2%
978082	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.59	51.0	3.41e-01	96.9%	74.0%
3511834	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.58	44.0	4.00e-01	79.4%	93.8%
3736656	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.57	48.0	3.08e-01	95.9%	75.0%
3471901	3640.1.1.0 ↗	alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain	0.53	35.0	3.42e-01	89.7%	61.9%
3499869	633.24.1.4 ↗	alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › RIN1	0.53	35.0	3.41e-01	89.7%	61.9%
3615526	150.5.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like	0.53	36.0	3.98e-01	70.1%	85.0%
3585870	133.1.1.1 ↗	alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF	0.51	46.0	3.37e-01	96.9%	62.9%

D7 medium residues 667-726

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	26.6	1.30e-06	98.3%	5.6%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kr9A02	1.10.287.1890	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.70	43.0	4.27e-01	71.7%	60.7%
2e62A01	6.10.140.420	Special › Helix non-globular › Helix Hairpins ›	0.66	46.0	4.82e-01	91.7%	84.6%
1tt5C01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.64	48.0	3.04e-01	81.7%	16.6%
1hs7A00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.62	44.0	3.72e-01	73.3%	47.4%
6cy5A01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.62	45.0	4.10e-01	83.3%	55.1%
2e9xB02	1.20.58.1020	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	52.0	4.21e-01	91.7%	75.2%
1gaxA05	1.10.287.380	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain	0.59	48.0	4.49e-01	90.0%	71.2%
4a64C03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.53	41.0	3.51e-01	93.3%	51.0%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3600712	192.5.1.0 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat	0.73	48.0	4.27e-01	81.7%	48.2%
4030097	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.72	59.0	3.65e-01	93.3%	16.7%
3180179	148.1.1.15 ↗	alpha arrays › Histone-like › Histone-related › Histone › CENP-X	0.70	54.0	5.07e-01	93.3%	68.0%
3180974	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.70	44.0	4.58e-01	71.7%	69.1%
4250185	602.1.1.1 ↗	alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1	0.70	55.0	3.54e-01	85.0%	80.7%
4023206	3711.1.1.0 ↗	alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein	0.68	58.0	3.91e-01	100.0%	48.4%
5002748	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.66	50.0	4.63e-01	80.0%	73.3%
3632463	192.6.1.0 ↗	alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain	0.64	47.0	3.67e-01	76.7%	79.2%
3812592	109.4.1.1948 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle	0.63	52.0	3.71e-01	88.3%	63.7%
4553114	904.1.1.1 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box	0.61	45.0	3.22e-01	76.7%	27.9%
5041226	604.16.1.0 ↗	alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain	0.61	48.0	4.69e-01	83.3%	86.2%
3505524	904.1.1.0 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain	0.60	50.0	5.04e-01	88.3%	90.0%
3586032	605.1.1.237 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Patched	0.60	47.0	3.94e-01	86.7%	58.1%
3532900	5071.1.1.0 ↗	alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	0.60	48.0	4.66e-01	93.3%	97.1%
3528571	904.1.1.1 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box	0.56	48.0	3.29e-01	95.0%	54.9%
5049641	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.55	48.0	4.45e-01	98.3%	80.0%
3706903	277.1.1.1 ↗	a+b two layers › PX domain › PX domain › PX domain › PX	0.54	49.0	3.62e-01	100.0%	71.9%

D8 medium residues 1044-1139

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_182358__Gallid_alphaherpesvirus_1__10386__D872-948

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	35.2	3.30e-09	100.0%	8.4%