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single-stranded_DNA-binding_protein

Euk-Vir

Pigeon_adenovirus_1

single-stranded_DNA-binding_protein__YP_009047104__Pigeon_adenovirus_1__764030

Identity

Accession:: YP_009047104 ↗
Protein ID:: single-stranded_DNA-binding_protein
Kingdom:: euk

Quality

72.5 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Pigeon_adenovirus_1

TaxID: 764030

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 175-228_328-341_425-467

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5kivA01	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.66	40.0	3.34e-01	93.7%	36.0%
1c9bA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.64	34.0	3.58e-01	90.1%	55.7%
1yd9B00	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.64	40.0	3.33e-01	93.7%	36.9%
3laxA00	3.30.300.30	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain	0.58	33.0	3.40e-01	89.2%	58.5%
4r0mA02	3.30.300.30	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain	0.56	31.0	3.21e-01	90.1%	55.6%
3bypA00	3.30.70.1350	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain	0.56	33.0	3.76e-01	99.1%	79.3%
3nzpB02	3.20.20.10	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase	0.52	38.0	2.89e-01	95.5%	32.2%
1g2rA00	3.30.1230.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like	0.51	32.0	3.41e-01	85.6%	73.4%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3668562	101.1.10.3 ↗	alpha arrays › HTH › HTH › Cyclin-like › TFIIB	0.70	40.0	3.46e-01	91.9%	37.0%
3679788	101.1.20.5 ↗	alpha arrays › HTH › HTH › Sigma54 core-binding domain › TFIIB	0.70	39.0	3.30e-01	91.0%	33.3%
4277836	313.1.1.1 ↗	a+b complex topology › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › MurB_C	0.66	33.0	3.26e-01	92.8%	45.2%
4597936	313.1.1.0 ↗	a+b complex topology › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain	0.65	32.0	3.42e-01	92.8%	52.0%
4358642	313.1.1.1 ↗	a+b complex topology › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › MurB_C	0.64	32.0	3.29e-01	93.7%	49.5%
3697157	101.1.10.22 ↗	alpha arrays › HTH › HTH › Cyclin-like › ORC6	0.60	32.0	3.40e-01	83.8%	55.0%
5000182	101.1.10.3 ↗	alpha arrays › HTH › HTH › Cyclin-like › TFIIB	0.58	35.0	3.65e-01	94.6%	62.9%
3593173	4001.1.1.0 ↗	a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins	0.56	35.0	3.25e-01	91.9%	50.4%
3496406	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.54	40.0	3.80e-01	85.6%	65.2%

D2 medium residues 229-298

PDB

Domain cluster: rep: DBP__YP_007347008__Bovine_adenovirus_6__111167__D124-183

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03728.19 best	Viral_DNA_Zn_bi	41.4	2.40e-10	100.0%	66.3%

D3 medium residues 299-327_342-393

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03728.19 best	Viral_DNA_Zn_bi	43.6	5.20e-11	66.7%	49.0%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1aduB02	3.90.148.10	Alpha Beta › Alpha-Beta Complex › Adenovirus Single-stranded DNA-binding Protein; domain 2 › Adenovirus DNA-binding, C-terminal domain superfamily/Adenovirus DNA-binding, zinc binding domain	0.84	78.0	6.33e-01	100.0%	62.2%
1ss3A00	1.10.287.720	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pollen allergen ole e 6	0.61	28.0	3.52e-01	85.2%	70.0%