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single-stranded_DNA-binding_protein

Euk-Vir

Human_alphaherpesvirus_1

single-stranded_DNA-binding_protein__YP_009137104__Human_alphaherpesvirus_1__10298

Identity

Accession:: YP_009137104 ↗
Protein ID:: single-stranded_DNA-binding_protein
Kingdom:: euk

Quality

75.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Human_alphaherpesvirus_1

TaxID: 10298

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1051-1136

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_182358__Gallid_alphaherpesvirus_1__10386__D872-948

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	67.5	5.90e-19	100.0%	7.6%

D2 medium residues 17-61_88-277

PDB

Domain cluster: rep: ORF6__YP_001129352__Human_gammaherpesvirus_8__37296__D13-252_683-721

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	304.5	1.60e-90	100.0%	22.5%

D3 medium residues 62-87_723-767

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1kk1A02	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.52	44.0	3.91e-01	98.6%	71.2%
5gjnA01	2.40.37.10	Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1	0.51	45.0	3.59e-01	100.0%	82.1%
4isbB02	3.30.300.30	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain	0.51	41.0	3.66e-01	98.6%	60.7%
1hkvA01	2.40.37.10	Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1	0.51	43.0	3.28e-01	100.0%	67.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3940353	4076.3.1.0 ↗	a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain	0.50	28.0	3.11e-01	81.7%	69.1%

D4 medium residues 560-655_852-912

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009176908__Testudinid_alphaherpesvirus_3__2560801__D537-651_841-913

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	93.5	7.80e-27	63.1%	8.5%
PF00747.23	Viral_DNA_bp	66.4	1.20e-18	39.5%	5.7%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1urjA02	1.20.190.40	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Viral ssDNA binding protein, head domain	0.92	83.0	7.57e-01	91.7%	96.9%
6vudA01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.56	36.0	4.24e-01	86.6%	93.6%
1j8yF01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.54	30.0	3.96e-01	88.5%	98.8%
2w31A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.54	34.0	3.49e-01	95.5%	63.8%
1werA02	1.10.506.10	Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1	0.53	30.0	3.13e-01	93.6%	57.4%
1w36F02	1.10.10.160	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.52	25.0	3.10e-01	74.5%	70.0%
2lnlA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	40.0	3.29e-01	84.1%	77.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1406103	3694.1.1.3 ↗	alpha bundles › Tail specific protease helical domain › Tail specific protease helical domain › Tail specific protease helical domain › TSP_NTD	0.55	34.0	3.09e-01	78.3%	45.8%
3590328	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.50	33.0	3.22e-01	80.9%	57.2%
4024992	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.50	35.0	3.68e-01	91.1%	77.2%
3742628	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.50	39.0	3.95e-01	88.5%	81.8%

D5 medium residues 656-722

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009046527__Falconid_herpesvirus_1__1510155__D667-726

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	49.2	1.90e-13	100.0%	6.0%

D6 medium residues 913-1038

PDB