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single-stranded_DNA-binding_protein
Euk-VirTestudinid_alphaherpesvirus_3
single-stranded_DNA-binding_protein__YP_009176908__Testudinid_alphaherpesvirus_3__2560801
Identity
- Accession:
- YP_009176908 ↗
- Protein ID:
- single-stranded_DNA-binding_protein
- Kingdom:
- euk
Quality
75.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Scutavirus›
Testudinid_alphaherpesvirus_3
TaxID: 2560801
Cluster
View cluster (33 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1033-1131
D2
medium
residues 12-275_725-763
Domain cluster:
rep: ORF6__YP_001129352__Human_gammaherpesvirus_8__37296__D13-252_683-721
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00747.23 best | Viral_DNA_bp | 231.6 | 1.50e-68 | 92.7% | 22.8% |
D3
medium
residues 276-334_386-439_667-724
D4
medium
residues 335-385_440-475_518-536_652-666
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00747.23 best | Viral_DNA_bp | 40.7 | 6.90e-11 | 45.5% | 2.8% |
| PF00747.23 | Viral_DNA_bp | 49.8 | 1.30e-13 | 43.8% | 4.3% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yy7A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 32.0 | 3.42e-01 | 95.9% | 73.3% |
| 4neoA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.50 | 29.0 | 3.45e-01 | 91.7% | 83.1% |
D5
medium
residues 537-651_841-913
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00747.23 best | Viral_DNA_bp | 90.7 | 5.50e-26 | 62.2% | 10.0% |
| PF00747.23 | Viral_DNA_bp | 48.7 | 2.80e-13 | 39.4% | 6.5% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1urjA02 | 1.20.190.40 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Viral ssDNA binding protein, head domain | 0.80 | 75.0 | 7.47e-01 | 96.3% | 100.0% |
| 2ra1A01 | 1.20.58.790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 28.0 | 3.73e-01 | 76.1% | 93.9% |
| 1hciA04 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 29.0 | 3.65e-01 | 81.9% | 86.0% |
| 4xpwA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.54 | 33.0 | 3.89e-01 | 93.6% | 87.0% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.51 | 29.0 | 3.50e-01 | 89.4% | 83.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3740238 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.54 | 36.0 | 3.92e-01 | 83.0% | 80.5% |
| 3321714 | 4177.1.1.133 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Tcp11 | 0.53 | 31.0 | 3.31e-01 | 93.6% | 64.8% |
| 4629417 | 140.1.1.7 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 | 0.51 | 28.0 | 3.12e-01 | 96.8% | 65.5% |
D6
medium
residues 780-840
Domain cluster:
representative
D7
medium
residues 914-1032