single-stranded_DNA-binding_protein

Euk-Vir

Hawaiian_green_turtle_herpesvirus

single-stranded_DNA-binding_protein__YP_009207090__Hawaiian_green_turtle_herpesvirus__70564

Identity

73.6 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Scutavirus› Hawaiian_green_turtle_herpesvirus

TaxID: 70564

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-337_720-753

PDB

Domain cluster: rep: ORF6__YP_001129352__Human_gammaherpesvirus_8__37296__D13-252_683-721

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	261.6	1.40e-77	96.1%	28.1%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3p96A02	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.53	15.0	3.09e-01	96.9%	98.8%
2d9rA00	2.40.30.100	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like	0.53	13.0	2.66e-01	89.1%	81.2%
3w1zC00	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	16.0	2.63e-01	85.7%	69.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7679	4174.1.1.1 ↗	a+b complex topology › N-terminal domain in viral ssDNA binding protein › N-terminal domain in viral ssDNA binding protein › N-terminal domain in viral ssDNA binding protein › Viral_DNA_bp	0.95	70.0	8.05e-01	75.4%	96.4%

D2 medium residues 338-366_394-403_435-520

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_002333512__Equid_alphaherpesvirus_9__55744__D410-427_442-536

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	85.6	2.00e-24	72.0%	7.5%

D3 medium residues 521-549_645-719_762-775

PDB

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	32.2	2.60e-08	71.2%	4.1%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2e9xB02	1.20.58.1020	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	33.0	3.48e-01	90.7%	68.8%
3gzfD00	1.10.150.420	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus	0.50	25.0	2.76e-01	70.3%	57.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3220431	188.1.1.1 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep	0.56	47.0	3.57e-01	90.7%	85.9%
3244541	188.1.1.1 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep	0.55	47.0	3.62e-01	90.7%	84.3%
3216207	188.1.1.1 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep	0.55	46.0	3.59e-01	89.8%	85.9%
3237283	188.1.1.1 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep	0.54	42.0	3.20e-01	93.2%	34.6%
4397497	589.1.1.2 ↗	alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N_3	0.51	40.0	3.57e-01	83.1%	93.5%

D4 medium residues 569-644_776-871

PDB