single-stranded_DNA-binding_protein

Euk-Vir

Spheniscid_alphaherpesvirus_1

single-stranded_DNA-binding_protein__YP_009342374__Spheniscid_alphaherpesvirus_1__2560777

Identity

73.5 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Spheniscid_alphaherpesvirus_1

TaxID: 2560777

View cluster (33 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1057-1139

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_182358__Gallid_alphaherpesvirus_1__10386__D872-948

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	26.0	2.00e-06	100.0%	7.2%

D2 medium residues 1-14_57-86_194-220_273-284_314-342_387-463_660-771

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	65.5	2.30e-18	37.5%	10.5%
PF00747.23	Viral_DNA_bp	45.4	2.60e-12	27.6%	6.8%

D3 medium residues 15-56_87-193_221-272

PDB

Domain cluster: rep: major_DNA_binding_protein__NP_042934__Human_betaherpesvirus_6A__32603__D1-185

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	113.6	7.00e-33	54.7%	9.7%
PF00747.23	Viral_DNA_bp	45.7	2.20e-12	25.9%	4.5%
PF00747.23	Viral_DNA_bp	27.3	7.60e-07	20.9%	3.9%

D4 medium residues 464-535

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	78.2	3.40e-22	98.6%	5.9%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ua8A02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.54	37.0	2.83e-01	73.6%	76.2%
2vzcB00	1.10.418.10	Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain	0.53	43.0	3.71e-01	94.4%	98.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3516873	159.1.1.3 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › DUF1599	0.57	40.0	3.87e-01	72.2%	76.2%

D5 medium residues 536-604_772-791_980-1026

PDB

D6 medium residues 792-853

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_053076__Equid_alphaherpesvirus_1__10326__D806-859

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	50.8	6.30e-14	98.4%	4.9%