single-stranded_DNA-binding_protein

Euk-Vir

Columbid_alphaherpesvirus_1

single-stranded_DNA-binding_protein__YP_009352937__Columbid_alphaherpesvirus_1__93386

Identity

76.0 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Columbid_alphaherpesvirus_1

TaxID: 93386

View cluster (33 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1044-1142

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_182358__Gallid_alphaherpesvirus_1__10386__D872-948

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	36.3	1.50e-09	100.0%	9.0%

D2 medium residues 1-13_45-95_151-215_734-768

PDB

Domain cluster: rep: JM5__YP_238308__Macaca_fuscata_rhadinovirus__272551__D62-101_150-211_236-257_687-715

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	54.4	5.00e-15	51.2%	5.8%
PF00747.23	Viral_DNA_bp	40.4	8.40e-11	37.8%	4.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7679	4174.1.1.1 ↗	a+b complex topology › N-terminal domain in viral ssDNA binding protein › N-terminal domain in viral ssDNA binding protein › N-terminal domain in viral ssDNA binding protein › Viral_DNA_bp	0.72	68.0	5.49e-01	96.3%	94.2%

D3 medium residues 473-537

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009342374__Spheniscid_alphaherpesvirus_1__2560777__D464-535

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	58.2	3.60e-16	100.0%	5.6%

D4 medium residues 555-660

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_164472__Cercopithecine_alphaherpesvirus_2__10317__D550-561_589-655

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	79.8	1.10e-22	100.0%	9.4%

D5 medium residues 790-914

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	121.4	3.10e-35	97.6%	10.2%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1urjA02	1.20.190.40	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Viral ssDNA binding protein, head domain	0.97	83.0	6.89e-01	88.0%	55.9%
1eiaA01	1.10.375.10	Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein	0.55	37.0	3.71e-01	84.8%	63.9%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4950461	1079.1.1.5 ↗	alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD_2	0.56	42.0	3.52e-01	77.6%	95.7%
3758003	5054.1.1.9 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PKD_channel	0.51	45.0	3.40e-01	98.4%	81.6%