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single-stranded_DNA-binding_protein

Euk-Vir

Fowl_aviadenovirus_6

single-stranded_DNA-binding_protein__YP_009505665__Fowl_aviadenovirus_6__172862

Identity

Accession:: YP_009505665 ↗
Protein ID:: single-stranded_DNA-binding_protein
Kingdom:: euk

Quality

68.2 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Fowl_aviadenovirus_6

TaxID: 172862

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 232-291_512-533

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02236.24 best	Viral_DNA_bi	69.8	3.10e-19	67.1%	69.6%

CATH (23)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wb0X01	1.10.269.10	Mainly Alpha › Orthogonal Bundle › Adenovirus Single-stranded Dna-binding Protein, domain 1 › Adenovirus DNA-binding, N-terminal domain	0.92	87.0	7.55e-01	100.0%	74.4%
3ce9A02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.62	54.0	4.18e-01	100.0%	89.7%
2bnlC00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.61	50.0	4.35e-01	92.7%	87.3%
4mo1A00	1.10.274.110	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 ›	0.61	50.0	4.14e-01	90.2%	91.0%
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.60	52.0	3.97e-01	96.3%	95.8%
3zokA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.59	49.0	3.83e-01	95.1%	91.6%
3i7aA00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.58	40.0	2.83e-01	73.2%	22.9%
1c9bA02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.57	50.0	4.62e-01	98.8%	86.8%
3dwbA01	3.40.390.10	Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain)	0.57	48.0	3.23e-01	92.7%	73.0%
3clhA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.57	48.0	3.98e-01	95.1%	91.3%
1zp2A02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.56	42.0	3.88e-01	82.9%	81.2%
1yhlA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.55	46.0	3.09e-01	95.1%	53.3%
4id0A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.55	39.0	3.57e-01	75.6%	84.8%
1vw4L01	3.90.1030.10	Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17	0.55	37.0	3.18e-01	70.7%	53.3%
1px5A02	1.10.1410.20	Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 2'-5'-oligoadenylate synthetase 1, domain 2	0.53	45.0	3.55e-01	96.3%	82.3%
3b81A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	39.0	3.03e-01	78.0%	39.9%
7e84A03	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	40.0	3.51e-01	91.5%	54.5%
3feyA02	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.52	42.0	3.29e-01	91.5%	69.8%
1d8bA00	1.10.150.80	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain	0.52	39.0	3.98e-01	84.1%	84.0%
5gj7A01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.51	38.0	3.39e-01	80.5%	99.2%
3d85C00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.51	36.0	3.00e-01	73.2%	73.7%
2rhfA00	1.10.150.80	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain	0.51	39.0	4.06e-01	89.0%	93.4%
1vw4900	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.50	43.0	3.32e-01	98.8%	68.2%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3793437	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.59	41.0	3.88e-01	72.0%	84.0%
4024777	5081.1.1.0 ↗	alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like	0.58	47.0	3.78e-01	91.5%	93.1%
3988314	1002.1.1.4 ↗	alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › ThrE_2	0.58	49.0	4.18e-01	98.8%	88.9%
3262268	101.1.10.13 ↗	alpha arrays › HTH › HTH › Cyclin-like › DUF3452	0.57	46.0	3.75e-01	90.2%	60.6%
3942189	5065.1.1.3 ↗	alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2	0.57	39.0	2.69e-01	72.0%	50.0%
3598970	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.55	45.0	4.07e-01	92.7%	92.2%
5077084	5065.1.1.3 ↗	alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2	0.55	38.0	2.79e-01	72.0%	71.7%
4102879	604.12.1.76 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › IspA	0.54	38.0	3.89e-01	73.2%	81.2%
5042893	150.1.1.3 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin	0.53	37.0	3.03e-01	73.2%	77.5%
3670388	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.53	32.0	2.73e-01	87.8%	36.3%
3946482	5065.1.1.3 ↗	alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2	0.53	40.0	2.78e-01	80.5%	68.9%
3487969	148.1.1.0 ↗	alpha arrays › Histone-like › Histone-related › Histone	0.52	40.0	4.25e-01	86.6%	90.7%
4990639	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.52	42.0	3.01e-01	92.7%	84.2%
3285078	191.1.1.63 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_N	0.51	44.0	3.31e-01	96.3%	40.0%
4031552	1075.1.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain	0.51	45.0	3.33e-01	100.0%	54.5%
4571770	186.1.1.2 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Flp_N	0.51	43.0	3.87e-01	98.8%	68.3%
3962191	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.50	36.0	3.54e-01	79.3%	68.9%

D2 medium residues 292-303_385-478_498-511

PDB

Domain cluster: rep: DNA-binding_protein__YP_007985656__Fowl_aviadenovirus_5__172861__D340-418_440-494

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03728.19 best	Viral_DNA_Zn_bi	69.8	3.30e-19	61.7%	86.7%

D3 medium residues 304-384

PDB

Domain cluster: rep: DBP__YP_007347008__Bovine_adenovirus_6__111167__D124-183

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03728.19 best	Viral_DNA_Zn_bi	64.1	2.10e-17	98.8%	80.6%