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single-stranded_DNA-binding_protein

Euk-Vir

Cercopithecine_alphaherpesvirus_2

single-stranded_DNA-binding_protein__YP_164472__Cercopithecine_alphaherpesvirus_2__10317

Identity

Accession:: YP_164472 ↗
Protein ID:: single-stranded_DNA-binding_protein
Kingdom:: euk

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Cercopithecine_alphaherpesvirus_2

TaxID: 10317

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1050-1135

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_182358__Gallid_alphaherpesvirus_1__10386__D872-948

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	57.9	4.60e-16	100.0%	7.4%

D2 medium residues 3-59_91-114_127-158_185-213_225-245

PDB

Domain cluster: rep: major_DNA_binding_protein__NP_042934__Human_betaherpesvirus_6A__32603__D1-185

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	31.2	5.20e-08	38.6%	6.3%
PF00747.23	Viral_DNA_bp	43.4	1.10e-11	35.6%	4.8%
PF00747.23	Viral_DNA_bp	31.5	4.20e-08	31.3%	5.1%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2nyhA00	3.30.70.1240	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › DOPA-like domains	0.51	29.0	3.35e-01	83.4%	77.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7679	4174.1.1.1 ↗	a+b complex topology › N-terminal domain in viral ssDNA binding protein › N-terminal domain in viral ssDNA binding protein › N-terminal domain in viral ssDNA binding protein › Viral_DNA_bp	0.97	91.0	7.36e-01	96.3%	84.7%

D3 medium residues 246-289_310-355

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	77.5	5.50e-22	100.0%	8.6%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2dofA00	1.10.10.440	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain	0.60	42.0	4.36e-01	72.2%	84.7%
1c5aA00	1.20.91.20	Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system)	0.56	36.0	4.07e-01	76.7%	89.2%
2dr1A01	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.55	35.0	3.07e-01	77.8%	41.5%
6i3mE01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.51	36.0	3.20e-01	74.4%	54.0%
3l44A01	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.51	30.0	2.35e-01	72.2%	29.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4585740	101.11.1.0 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	0.62	45.0	4.57e-01	75.6%	93.3%
5031058	3016.1.1.2 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3	0.60	34.0	3.80e-01	76.7%	71.4%
3281891	4168.1.1.0 ↗	alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain	0.56	38.0	4.00e-01	70.0%	82.5%

D4 medium residues 356-374_532-549_656-731_769-775

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	50.1	1.00e-13	67.5%	7.1%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1is8A01	1.10.286.10	Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain	0.62	31.0	4.07e-01	71.7%	91.7%
3bujA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.55	47.0	3.25e-01	91.7%	79.3%
3gyuA00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.54	36.0	2.94e-01	84.2%	33.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3786419	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	35.0	3.97e-01	80.0%	93.3%

D5 medium residues 375-531

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_002333512__Equid_alphaherpesvirus_9__55744__D410-427_442-536

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	177.3	4.10e-52	100.0%	13.7%

D6 medium residues 550-561_589-655

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	51.2	4.80e-14	98.7%	5.9%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1x9nA01	1.10.3260.10	Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain	0.50	39.0	2.76e-01	86.1%	73.5%

D7 medium residues 562-588_807-922

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009176908__Testudinid_alphaherpesvirus_3__2560801__D537-651_841-913

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	143.5	6.50e-42	81.8%	9.7%

D8 medium residues 959-1031

PDB