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single-stranded_DNA-binding_protein

Euk-Vir

Human_gammaherpesvirus_4

single-stranded_DNA-binding_protein__YP_401717__Human_gammaherpesvirus_4__10376

Identity

Accession:: YP_401717 ↗
Protein ID:: single-stranded_DNA-binding_protein
Kingdom:: euk

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Lymphocryptovirus› human_gammaherpesvirus_4

TaxID: 10376

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 991-1073

PDB

Domain cluster: rep: JM5__YP_238308__Macaca_fuscata_rhadinovirus__272551__D1010-1077

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	69.8	1.20e-19	100.0%	7.3%

D2 medium residues 11-106_131-242_676-717

PDB

Domain cluster: rep: ORF6__YP_001129352__Human_gammaherpesvirus_8__37296__D13-252_683-721

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	120.0	8.20e-35	46.4%	11.5%
PF00747.23	Viral_DNA_bp	112.1	1.90e-32	40.0%	8.6%

D3 medium residues 107-130_243-273_315-392_405-430_453-486_612-624

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	150.9	3.70e-44	72.8%	15.7%

D4 medium residues 274-314_625-675

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	70.9	5.20e-20	56.5%	4.5%
PF00747.23	Viral_DNA_bp	37.9	4.80e-10	45.6%	3.6%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3v9rA00	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.57	32.0	3.36e-01	88.0%	58.0%
7eq1R01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.55	44.0	3.14e-01	88.0%	36.8%
1wgwA00	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.53	36.0	3.57e-01	94.6%	65.7%
3mekA03	1.10.220.160	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 ›	0.51	29.0	3.02e-01	79.3%	58.1%
3lqhA02	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.51	35.0	3.41e-01	100.0%	62.3%
2hzdA00	6.10.20.40	Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain	0.50	28.0	2.93e-01	85.9%	59.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3266109	210.1.2.11 ↗	a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › SWIRM-assoc_2	0.51	46.0	4.05e-01	97.8%	69.2%

D5 medium residues 487-506_588-611_718-745_845-944_966-982

PDB

D6 medium residues 524-587

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	51.8	3.20e-14	100.0%	6.1%

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3lphC00	6.10.140.630	Special › Helix non-globular › Helix Hairpins ›	0.71	55.0	5.70e-01	98.4%	93.1%
5jazA03	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.70	50.0	4.44e-01	96.9%	52.7%
2ce7B03	1.20.58.760	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41	0.68	61.0	4.48e-01	100.0%	72.0%
3hr0B01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.67	59.0	5.47e-01	98.4%	78.5%
2b7mA00	1.20.1280.170	Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70	0.67	59.0	3.47e-01	100.0%	13.3%
2vqrA01	3.40.720.10	Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A	0.66	58.0	3.48e-01	100.0%	66.2%
3okqA00	1.20.58.1540	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain	0.64	50.0	4.08e-01	85.9%	48.8%
2ix5A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.63	55.0	4.16e-01	98.4%	56.1%
6lo8F01	1.10.287.810	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains	0.63	49.0	4.87e-01	95.3%	81.2%
3l1nA01	6.10.140.790	Special › Helix non-globular › Helix Hairpins ›	0.63	46.0	5.07e-01	82.8%	100.0%
1b5lA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.62	50.0	3.89e-01	92.2%	67.8%
6r1nA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.62	53.0	4.61e-01	98.4%	96.1%
1wu3I00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.62	51.0	3.88e-01	95.3%	71.4%
3ns4A00	1.10.357.110	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus	0.61	52.0	3.76e-01	100.0%	32.2%
2pg0A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.61	53.0	4.09e-01	98.4%	58.4%
3nvoB02	1.20.58.340	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region	0.61	54.0	4.41e-01	98.4%	55.2%
4ceiA03	6.10.250.2380	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.59	52.0	4.36e-01	100.0%	92.9%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3182060	4168.1.1.0 ↗	alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain	0.76	51.0	4.87e-01	84.4%	60.0%
4511746	150.5.1.51 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100_2	0.71	64.0	4.65e-01	100.0%	38.9%
4033102	632.5.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylocoagulase › Staphylocoagulase	0.71	63.0	5.52e-01	100.0%	81.1%
4217794	5086.1.1.94 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HB_LcnD	0.69	61.0	4.90e-01	98.4%	96.8%
4304195	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.68	60.0	4.03e-01	100.0%	55.6%
1552160	4070.1.1.1 ↗	alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41	0.66	60.0	4.19e-01	100.0%	63.8%
3610238	4070.1.1.1 ↗	alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41	0.66	59.0	4.12e-01	100.0%	69.4%
3597298	4070.1.1.0 ↗	alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like	0.66	59.0	4.12e-01	100.0%	69.7%
3175323	7015.1.1.1 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC	0.66	58.0	3.79e-01	100.0%	23.0%
3270180	5063.1.1.0 ↗	alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK	0.59	52.0	4.62e-01	96.9%	72.2%

D7 medium residues 746-844

PDB

Domain cluster: rep: ORF6__YP_010084546__Macaca_nemestrina_rhadinovirus_2__123630__D750-828

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	130.8	4.50e-38	100.0%	8.6%