single-stranded_DNA-binding_protein

Euk-Vir

Papiine_alphaherpesvirus_2

single-stranded_DNA-binding_protein__YP_443876__Papiine_alphaherpesvirus_2__340907

Identity

77.0 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Papiine_alphaherpesvirus_2

TaxID: 340907

View cluster (33 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-107_147-163_176-204_726-772

PDB

Domain cluster: rep: JM5__YP_238308__Macaca_fuscata_rhadinovirus__272551__D62-101_150-211_236-257_687-715

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	63.8	7.60e-18	42.4%	5.2%

D2 medium residues 125-146_164-175_205-281

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	86.7	9.20e-25	73.9%	6.8%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ix7A00	1.10.10.2590	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain	0.57	35.0	3.52e-01	70.3%	59.6%
3ephA02	1.10.20.140	Mainly Alpha › Orthogonal Bundle › Histone, subunit A ›	0.51	26.0	3.18e-01	76.6%	76.4%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7679	4174.1.1.1 ↗	a+b complex topology › N-terminal domain in viral ssDNA binding protein › N-terminal domain in viral ssDNA binding protein › N-terminal domain in viral ssDNA binding protein › Viral_DNA_bp	0.95	92.0	6.55e-01	100.0%	57.3%
5027220	5041.1.1.0 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C	0.56	24.0	3.12e-01	74.8%	70.0%
3712891	136.1.1.0 ↗	alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases	0.52	37.0	2.81e-01	80.2%	28.8%

D3 medium residues 489-525

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	37.2	8.20e-10	100.0%	3.2%

D4 medium residues 533-555_655-668_773-783_957-1040

PDB

D5 medium residues 594-654_798-925

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009176908__Testudinid_alphaherpesvirus_3__2560801__D537-651_841-913

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	153.4	6.70e-45	68.8%	10.9%
PF00747.23	Viral_DNA_bp	42.6	1.90e-11	34.9%	5.7%

D6 medium residues 1052-1140

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_182358__Gallid_alphaherpesvirus_1__10386__D872-948

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	56.5	1.20e-15	100.0%	7.8%