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single-stranded_DNA_binding_protein
Euk-VirDiatraea_saccharalis_granulovirus
single-stranded_DNA_binding_protein__YP_009182267__Diatraea_saccharalis_granulovirus__1675862
Identity
- Accession:
- YP_009182267 ↗
- Protein ID:
- single-stranded_DNA_binding_protein
- Kingdom:
- euk
Quality
86.6
mean pLDDT
Taxonomy
TaxID: 1675862
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-50_96-121_156-214
Domain cluster:
rep: DNA_binding_protein__YP_006908583__Epinotia_aporema_granulovirus__166056__D16-56_115-135_172-249_269-279
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04786.19 best | Baculo_DNA_bind | 52.1 | 8.60e-14 | 50.4% | 25.5% |
| PF04786.19 | Baculo_DNA_bind | 28.1 | 1.80e-06 | 26.4% | 11.7% |
D2
medium
residues 51-95_122-155_215-265
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04786.19 best | Baculo_DNA_bind | 38.8 | 1.00e-09 | 41.5% | 23.1% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jklA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 28.0 | 3.25e-01 | 74.6% | 61.1% |
| 5mj3A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 26.0 | 3.18e-01 | 72.3% | 69.0% |
| 6etzA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 24.0 | 2.99e-01 | 73.8% | 64.3% |
| 1lwrA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 29.0 | 3.28e-01 | 83.8% | 75.0% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.50 | 26.0 | 3.20e-01 | 96.2% | 80.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3999736 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.59 | 24.0 | 3.46e-01 | 81.5% | 80.0% |
| 1349499 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.59 | 28.0 | 3.27e-01 | 74.6% | 61.7% |
| 3906973 | 11.1.1.711 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FN3_IL27B_N | 0.56 | 30.0 | 3.38e-01 | 76.2% | 67.0% |
| 4667581 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.55 | 28.0 | 3.24e-01 | 74.6% | 66.7% |
| 3506341 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.55 | 26.0 | 3.22e-01 | 72.3% | 70.0% |
| 3642585 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.52 | 28.0 | 2.83e-01 | 84.6% | 51.5% |