single-stranded_RNA-binding_protein

Euk-Vir

Guangxi_orbivirus

single-stranded_RNA-binding_protein__YP_009551618__Guangxi_orbivirus__2306813

Identity

71.3 mean pLDDT

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Sedoreoviridae› Orbivirus› Guangxi_orbivirus

TaxID: 2306813

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-135

PDB

Domain cluster: rep: viral_inclusion_body_protein__YP_009158888__Wad_Medani_virus__40067__D17-130

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04514.20 best	BTV_NS2	166.2	2.10e-48	100.0%	30.8%

D2 high residues 166-212

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04514.20 best	BTV_NS2	38.0	1.90e-09	100.0%	11.5%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r0qC02	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.76	53.0	5.07e-01	74.5%	65.5%
1v07A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.74	48.0	3.60e-01	80.9%	28.2%
1uaaA02	1.10.10.160	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.71	51.0	4.38e-01	76.6%	62.2%
3t6gB00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.66	50.0	3.66e-01	80.9%	60.4%
1k6yA01	1.10.10.200	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain	0.65	44.0	4.47e-01	72.3%	73.9%
3idwA00	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.62	42.0	3.77e-01	70.2%	59.1%
3juiA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.60	51.0	3.53e-01	100.0%	72.4%
4k7cA01	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.59	49.0	2.94e-01	100.0%	29.7%
4gywA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.59	44.0	3.35e-01	78.7%	36.9%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4079860	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.83	57.0	5.21e-01	72.3%	93.3%
4994472	5060.1.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C	0.74	58.0	3.72e-01	85.1%	60.0%
3646770	181.1.1.0 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins	0.72	55.0	4.31e-01	83.0%	74.7%
3988829	1076.1.1.1 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like	0.62	50.0	3.34e-01	93.6%	67.8%

D3 high residues 349-434

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04514.20 best	BTV_NS2	71.4	1.40e-19	100.0%	22.5%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ci8A01	3.30.505.10	Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain	0.58	32.0	3.69e-01	98.8%	78.6%
2dmoA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.54	29.0	3.21e-01	98.8%	63.2%
6k5gA01	3.40.50.1580	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain	0.51	37.0	2.67e-01	79.1%	48.3%
2nncA00	2.60.40.2470	Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain	0.50	43.0	3.99e-01	95.3%	94.5%
5vt8D02	2.60.40.60	Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins	0.50	37.0	3.53e-01	77.9%	93.9%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4334411	896.1.1.1 ↗	a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e	0.61	33.0	3.74e-01	73.3%	69.2%
3471584	7579.1.1.5 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10	0.52	39.0	2.48e-01	81.4%	44.2%
3410270	11.1.1.605 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_9th	0.51	36.0	3.71e-01	73.3%	95.0%
3414386	11.1.1.1 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin	0.51	36.0	2.56e-01	75.6%	35.2%