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single_stranded_DNA-binding_protein

Euk-Vir

bat_adenovirus_3

single_stranded_DNA-binding_protein__YP_005271193__bat_adenovirus_3__2758098

Identity

Accession:
YP_005271193 ↗
Protein ID:
single_stranded_DNA-binding_protein
Kingdom:
euk

Quality

81.5 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› bat_adenovirus_3

TaxID: 2758098

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-101
PDB
Domain cluster: rep: DBP__YP_009162599__Skunk_adenovirus_PB1__1641642__D43-88
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vxtI00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.75 42.0 2.97e-01 74.5% 19.2%
2hlyA00 3.10.550.10 Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 0.71 50.0 3.39e-01 74.5% 60.5%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.70 42.0 2.69e-01 85.5% 13.3%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.69 46.0 3.11e-01 81.8% 19.0%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 36.0 2.88e-01 80.0% 26.9%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.63 47.0 3.47e-01 80.0% 77.1%
2dbuB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.60 41.0 2.84e-01 72.7% 46.8%
4eutB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 50.0 3.35e-01 92.7% 81.0%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 41.0 2.46e-01 83.6% 10.9%
2yugA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 41.0 2.99e-01 76.4% 71.6%
7cijA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 50.0 3.11e-01 98.2% 56.4%
2hqmA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 45.0 3.01e-01 92.7% 56.6%
3qdrB00 2.30.30.970 Mainly Beta › Roll › SH3 type barrels. › 0.56 29.0 3.05e-01 76.4% 42.9%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 3.16e-01 92.7% 49.2%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 43.0 3.50e-01 92.7% 65.5%
1nubA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 34.0 3.08e-01 94.5% 41.5%
1fthA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.54 39.0 3.00e-01 76.4% 53.0%
2arpF02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.54 32.0 2.95e-01 90.9% 40.3%
2hlzA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 46.0 2.96e-01 100.0% 45.9%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 37.0 3.41e-01 100.0% 55.6%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 45.0 3.67e-01 96.4% 60.7%
6jzaA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.54 34.0 3.06e-01 90.9% 43.2%
4zpjA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 45.0 3.17e-01 100.0% 29.2%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.56e-01 100.0% 67.8%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.53 36.0 2.95e-01 70.9% 38.1%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 35.0 3.51e-01 76.4% 65.5%
1nkiA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 39.0 2.98e-01 81.8% 44.0%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.23e-01 100.0% 46.1%
5hdiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 42.0 2.56e-01 92.7% 63.5%
1w2wB00 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.52 42.0 2.96e-01 92.7% 61.3%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.52 32.0 3.28e-01 89.1% 64.8%
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.52 33.0 3.94e-01 92.7% 100.0%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 29.0 3.32e-01 80.0% 82.4%
4hstA01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.51 39.0 2.92e-01 87.3% 57.6%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.50 28.0 2.78e-01 90.9% 46.8%
6ofsA03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 41.0 2.88e-01 98.2% 69.3%
3p0lD00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 37.0 2.59e-01 80.0% 65.4%
1bjtA05 3.90.199.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 0.50 41.0 2.79e-01 98.2% 96.8%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 34.0 2.67e-01 89.1% 32.5%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 35.0 3.33e-01 74.5% 66.7%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3226306 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.73 63.0 4.97e-01 100.0% 47.0%
3799828 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 41.0 2.56e-01 83.6% 12.2%
3226593 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.64 49.0 3.89e-01 81.8% 45.5%
3620848 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 45.0 2.51e-01 76.4% 30.6%
3520489 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.61 33.0 3.98e-01 90.9% 83.3%
4041343 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 33.0 3.46e-01 81.8% 56.0%
3445267 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.61 45.0 2.87e-01 80.0% 33.7%
4384294 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.60 32.0 3.61e-01 83.6% 60.0%
3463214 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 44.0 2.80e-01 78.2% 34.0%
3291533 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.60 40.0 3.47e-01 90.9% 44.7%
3223744 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.59 37.0 3.18e-01 98.2% 38.6%
3500034 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 49.0 3.33e-01 92.7% 65.9%
4285716 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 33.0 3.43e-01 85.5% 54.0%
3994442 5.1.2.34 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › PQQ_2 0.59 42.0 3.21e-01 80.0% 74.0%
3650026 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 36.0 3.41e-01 89.1% 50.8%
3897269 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.58 37.0 3.25e-01 98.2% 41.2%
4045124 7014.1.1.2 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.58 50.0 3.22e-01 98.2% 99.6%
3401697 4357.1.1.4 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_3 0.57 43.0 3.74e-01 89.1% 52.9%
5072839 101.21.1.0 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit 0.57 49.0 3.72e-01 100.0% 80.7%
5015285 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 40.0 2.45e-01 74.5% 20.3%
3685043 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 39.0 2.67e-01 70.9% 24.7%
3798068 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 40.0 2.75e-01 78.2% 89.8%
3837933 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 49.0 2.80e-01 100.0% 19.0%
1270539 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 45.0 3.30e-01 92.7% 82.2%
3682832 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.56 44.0 3.26e-01 90.9% 38.7%
3508415 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 41.0 3.09e-01 80.0% 68.5%
4975562 217.1.1.0 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain 0.54 43.0 2.77e-01 87.3% 78.9%
4440203 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.54 30.0 2.93e-01 78.2% 43.3%
3967108 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.54 30.0 3.40e-01 83.6% 60.0%
3712235 6171.1.1.0 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.54 47.0 3.30e-01 96.4% 77.6%
3471542 7585.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins 0.53 41.0 3.15e-01 92.7% 34.8%
3741324 109.4.1.463 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF1765 0.53 45.0 3.00e-01 100.0% 99.6%
3928729 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.53 38.0 2.71e-01 81.8% 59.3%
4157389 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.53 33.0 3.19e-01 85.5% 52.3%
3966081 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.53 39.0 3.52e-01 81.8% 73.8%
3988005 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 32.0 3.32e-01 80.0% 60.0%
3914000 4357.1.1.4 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_3 0.53 37.0 3.29e-01 76.4% 81.1%
3442857 109.1.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like 0.52 38.0 2.70e-01 80.0% 45.9%
3506222 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.52 40.0 4.31e-01 96.4% 100.0%
3413670 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.51 42.0 4.30e-01 92.7% 98.1%
4028937 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.51 43.0 2.44e-01 98.2% 10.5%
4095036 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.51 43.0 2.56e-01 96.4% 19.8%
4985100 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.80e-01 74.5% 84.0%
3335794 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 39.0 2.69e-01 89.1% 70.6%
3565861 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 30.0 3.09e-01 85.5% 58.2%
4959771 2002.1.1.450 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › LAM_C 0.51 41.0 2.53e-01 94.5% 17.4%
5078418 7584.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.51 40.0 2.56e-01 85.5% 42.2%
3722144 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.51 40.0 3.04e-01 87.3% 79.9%
4998113 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.50 35.0 3.82e-01 72.7% 91.1%
3987436 4333.1.1.1 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S 0.50 38.0 2.22e-01 80.0% 48.3%
D2 medium residues 143-219_419-446
PDB
Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009109584__Simian_adenovirus_DM-2014__1560346__D107-191_400-428
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02236.24 best Viral_DNA_bi 80.8 1.10e-22 67.6% 83.5%
D3 medium residues 220-239_299-418
PDB
Domain cluster: rep: DBP__YP_009162599__Skunk_adenovirus_PB1__1641642__D183-206_246-418
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03728.19 best Viral_DNA_Zn_bi 66.4 3.80e-18 55.7% 80.6%
D4 medium residues 240-298
PDB
Domain cluster: rep: DBP__YP_007347008__Bovine_adenovirus_6__111167__D124-183
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03728.19 best Viral_DNA_Zn_bi 34.9 2.50e-08 100.0% 56.1%