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site-specific_DNA-methyltransferase_CviBI

Euk-Vir

Micromonas_pusilla_virus_12T

site-specific_DNA-methyltransferase_CviBI__YP_007676256__Micromonas_pusilla_virus_12T__755272

Identity

Accession:: YP_007676256 ↗
Protein ID:: site-specific_DNA-methyltransferase_CviBI
Kingdom:: euk

Quality

88.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Prasinovirus› Micromonas_pusilla_virus_12T

TaxID: 755272

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-53_151-257

PDB

Domain cluster: rep: S2_009_000_R2_scaffold_143_prodigal-single.1__X__X__00197__D14-58_169-280

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02086.22 best	MethyltransfD12	49.3	7.80e-13	61.6%	33.3%
PF02086.22	MethyltransfD12	36.7	5.30e-09	30.8%	18.0%

D2 high residues 56-147

PDB

Domain cluster: rep: SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00363__D253-326

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02086.22 best	MethyltransfD12	53.9	3.10e-14	100.0%	38.8%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2dpmA02	1.10.1020.10	Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2	0.86	80.0	7.69e-01	100.0%	97.1%
2g1pA02	1.10.1020.10	Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2	0.84	78.0	7.56e-01	100.0%	96.0%
1q0sA02	1.10.1020.10	Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2	0.74	67.0	6.69e-01	100.0%	97.9%
5z7qA00	1.20.1330.10	Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain	0.55	45.0	3.67e-01	90.2%	83.5%
4r8zA00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.54	43.0	3.28e-01	85.9%	82.6%
4a4aA04	1.20.120.670	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › N-acetyl-b-d-glucoasminidase	0.54	47.0	3.38e-01	100.0%	76.9%
4mcwA02	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.52	42.0	3.35e-01	89.1%	84.5%
3k1hA00	3.30.1120.180	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076	0.51	45.0	4.20e-01	100.0%	98.3%
4cgyA04	1.10.290.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4	0.51	39.0	3.53e-01	82.6%	88.8%
7nc3F01	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.50	34.0	3.24e-01	70.7%	81.6%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4950762	2003.1.5.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12	0.86	81.0	5.61e-01	100.0%	34.4%
4482107	2003.1.5.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12	0.85	80.0	5.42e-01	100.0%	35.4%
4949366	2003.1.5.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12	0.84	79.0	5.35e-01	100.0%	37.3%
4988477	2003.1.5.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12	0.84	79.0	5.44e-01	100.0%	33.9%
5025561	2003.1.5.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12	0.84	78.0	5.47e-01	100.0%	35.4%
4006858	2003.1.5.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12	0.84	78.0	5.42e-01	100.0%	35.2%
4392983	2003.1.5.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12	0.81	76.0	5.19e-01	100.0%	36.8%
4585065	2003.1.5.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12	0.80	73.0	4.35e-01	100.0%	16.5%
4200568	2003.1.5.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12	0.77	70.0	4.92e-01	100.0%	36.0%
4241513	2003.1.5.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12	0.76	69.0	4.80e-01	100.0%	34.6%
9374	2003.1.5.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12	0.74	68.0	4.84e-01	100.0%	36.7%
3928777	101.1.2.154 ↗	alpha arrays › HTH › HTH › winged helix domain › CDT1_C	0.62	51.0	4.83e-01	91.3%	98.2%
4027206	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.59	48.0	4.26e-01	92.4%	79.3%
3925904	101.1.2.57 ↗	alpha arrays › HTH › HTH › winged helix domain › EAP30	0.56	42.0	3.49e-01	80.4%	63.4%
3280675	109.4.1.2062 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_23	0.55	38.0	2.41e-01	70.7%	14.1%
3944811	191.1.1.44 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_43	0.55	45.0	4.17e-01	89.1%	85.8%
3676995	109.4.1.1360 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p	0.53	43.0	2.68e-01	92.4%	25.9%
5036791	131.1.1.3 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD	0.50	40.0	3.07e-01	88.0%	89.6%