←Back to structures

small_T_antigen

Euk-Vir

Raccoon_polyomavirus

small_T_antigen__YP_009021044__Raccoon_polyomavirus__1219896

Identity

Accession:: YP_009021044 ↗
Protein ID:: small_T_antigen
Kingdom:: euk

Quality

76.0 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Alphapolyomavirus› Raccoon_polyomavirus

TaxID: 1219896

Cluster

View cluster (129 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 404-513

PDB

Domain cluster: rep: large_T_antigen__YP_009115503__Adelie_penguin_polyomavirus__1590650__D167-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02217.23 best	T_Ag_DNA_bind	99.5	1.90e-28	80.0%	90.4%

D2 high residues 528-612

PDB

Domain cluster: rep: ORF01L__YP_009252373__Marbled_eel_polyomavirus__1662286__D415-505

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	65.0	8.80e-18	100.0%	20.1%

D3 medium residues 7-177

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02380.21 best	Papo_T_antigen	75.1	5.30e-21	53.2%	93.5%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fafA00	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.90	37.0	5.63e-01	84.8%	87.3%
2guzA00	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.80	30.0	4.77e-01	80.1%	85.9%
2ycdA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	28.0	3.38e-01	90.6%	76.1%
4gltA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.50	29.0	3.51e-01	91.8%	85.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3692	650.1.1.0 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain	0.90	37.0	5.63e-01	84.8%	87.3%
3319356	650.1.1.5 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › CPP1-like	0.78	31.0	5.03e-01	80.1%	98.5%
3715968	650.1.1.1 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ	0.75	31.0	4.58e-01	79.5%	85.0%

D4 medium residues 624-652_805-881

PDB

Domain cluster: rep: large_T_antigen__YP_007195293__Alphapolyomavirus_septipanos__1891739__D391-454_582-665

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	40.8	1.90e-10	75.5%	16.8%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1svmA02	1.20.1050.70	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Large T antigen, SV40, domain 3	0.93	88.0	8.46e-01	99.1%	91.5%
3na7A00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.58	41.0	3.21e-01	74.5%	100.0%
6vqqA01	1.20.1080.10	Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein.	0.53	46.0	3.48e-01	96.2%	39.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3967000	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.51	36.0	2.97e-01	73.6%	64.5%

D5 medium residues 653-804

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	193.1	1.10e-56	98.7%	33.8%
PF00519.24	PPV_E1_C	39.5	5.20e-10	89.5%	37.7%