small_T_antigen

Euk-Vir

Alphapolyomavirus_tertipanos

small_T_antigen__YP_009094198__Alphapolyomavirus_tertipanos__1891735

Identity

85.7 mean pLDDT

View cluster (116 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-72

PDB

Domain cluster: rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77

D2 high residues 87-180

PDB

Domain cluster: rep: small_T_antigen__YP_010087530__Alphapolyomavirus_aflavicollis__2170408__D83-188

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02380.21 best	Papo_T_antigen	72.8	2.90e-20	96.8%	90.3%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pf4F02	1.20.120.1860	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Small t-antigen, unique domain	0.88	76.0	7.82e-01	98.9%	95.5%
3t69A02	3.30.420.310	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain	0.52	38.0	2.95e-01	76.6%	71.7%
6ig5A01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.51	35.0	3.09e-01	92.6%	48.6%
3bvxA02	1.20.1270.50	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain	0.50	37.0	3.50e-01	85.1%	65.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1177600	4162.1.1.1 ↗	few secondary structure elements › T-antigen specific domain-like › T-antigen specific domain-like › T-antigen specific domain-like › Papo_T_antigen	0.87	75.0	7.79e-01	98.9%	96.6%
5009371	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.59	45.0	4.15e-01	81.9%	87.2%
4981745	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.58	35.0	3.83e-01	85.1%	73.3%
4025457	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.58	33.0	3.48e-01	75.5%	61.2%
3738331	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.55	28.0	3.45e-01	87.2%	81.8%
4938066	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.52	32.0	3.74e-01	83.0%	89.2%
5058225	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.51	41.0	3.83e-01	89.4%	88.3%
3817679	2003.1.9.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF	0.50	41.0	2.66e-01	92.6%	92.6%