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small_T_antigen
Euk-VirAlphapolyomavirus_tertichlopygerythrus
small_T_antigen__YP_009111376__Alphapolyomavirus_tertichlopygerythrus__1891720
Identity
- Accession:
- YP_009111376 ↗
- Protein ID:
- small_T_antigen
- Kingdom:
- euk
Quality
87.1
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Sepolyvirales›
Polyomaviridae›
Alphapolyomavirus›
Alphapolyomavirus_tertichlopygerythrus
TaxID: 1891720
Cluster
View cluster (116 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-72
Domain cluster:
rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00226.37 best | DnaJ | 28.0 | 2.70e-06 | 87.9% | 66.7% |
D2
high
residues 92-186
Domain cluster:
rep: small_T_antigen__YP_010087530__Alphapolyomavirus_aflavicollis__2170408__D83-188
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02380.21 best | Papo_T_antigen | 119.6 | 7.40e-35 | 96.8% | 97.9% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pf4F02 | 1.20.120.1860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Small t-antigen, unique domain | 0.89 | 77.0 | 7.98e-01 | 96.8% | 96.6% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 40.0 | 2.99e-01 | 83.2% | 87.4% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.52 | 40.0 | 3.70e-01 | 97.9% | 62.9% |
| 3ivpD01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 35.0 | 3.81e-01 | 93.7% | 86.7% |
| 4yg1A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 34.0 | 3.89e-01 | 73.7% | 91.7% |
| 2vxdA00 | 1.10.10.2100 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain | 0.50 | 25.0 | 3.17e-01 | 70.5% | 81.5% |