small_T_antigen

Euk-Vir

Bank_vole_polyomavirus

small_T_antigen__YP_009174983__Bank_vole_polyomavirus__1737522

Identity

79.1 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Betapolyomavirus› Bank_vole_polyomavirus

TaxID: 1737522

View cluster (116 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-68

PDB

Domain cluster: rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77

D2 medium residues 81-211

PDB

Domain cluster: rep: small_T_antigen__YP_010087530__Alphapolyomavirus_aflavicollis__2170408__D83-188

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02380.21 best	Papo_T_antigen	78.9	3.50e-22	70.2%	94.6%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pf4F02	1.20.120.1860	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Small t-antigen, unique domain	0.93	60.0	7.37e-01	72.5%	96.6%
6wh0A01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.54	38.0	3.64e-01	71.0%	96.7%
2kbwA01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.54	38.0	3.68e-01	73.3%	94.1%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1177600	4162.1.1.1 ↗	few secondary structure elements › T-antigen specific domain-like › T-antigen specific domain-like › T-antigen specific domain-like › Papo_T_antigen	0.93	61.0	7.52e-01	75.6%	100.0%
5080141	5060.2.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	0.52	36.0	3.70e-01	72.5%	87.7%