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small_T_antigen
Euk-VirAlphapolyomavirus_aflavicollis
small_T_antigen__YP_010087530__Alphapolyomavirus_aflavicollis__2170408
Identity
- Accession:
- YP_010087530 ↗
- Protein ID:
- small_T_antigen
- Kingdom:
- euk
Quality
84.8
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Sepolyvirales›
Polyomaviridae›
Alphapolyomavirus›
Alphapolyomavirus_aflavicollis
TaxID: 2170408
Cluster
View cluster (116 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-73
Domain cluster:
rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77
D2
high
residues 83-188
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02380.21 best | Papo_T_antigen | 101.6 | 2.90e-29 | 88.7% | 98.9% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pf4F02 | 1.20.120.1860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Small t-antigen, unique domain | 0.89 | 70.0 | 7.61e-01 | 90.6% | 96.6% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.55 | 37.0 | 3.88e-01 | 87.7% | 76.8% |
| 2zm5B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 43.0 | 3.37e-01 | 90.6% | 85.7% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 30.0 | 3.28e-01 | 72.6% | 68.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1177600 | 4162.1.1.1 ↗ | few secondary structure elements › T-antigen specific domain-like › T-antigen specific domain-like › T-antigen specific domain-like › Papo_T_antigen | 0.90 | 71.0 | 7.79e-01 | 92.5% | 98.9% |
| 5000719 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 35.0 | 3.86e-01 | 90.6% | 85.0% |
| 4225510 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.53 | 43.0 | 3.41e-01 | 88.7% | 88.6% |
| 3301868 | 1075.1.1.21 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane+PDR_assoc | 0.53 | 38.0 | 2.95e-01 | 73.6% | 70.0% |