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small_capsid_protein
Euk-VirPanine_betaherpesvirus_2
small_capsid_protein__NP_612692__Panine_betaherpesvirus_2__188763
Identity
- Accession:
- NP_612692 ↗
- Protein ID:
- small_capsid_protein
- Kingdom:
- euk
Quality
69.7
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Cytomegalovirus›
Panine_betaherpesvirus_2
TaxID: 188763
Cluster
View cluster (19 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-81
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17086.11 best | HV_small_capsid | 64.0 | 1.80e-17 | 100.0% | 58.4% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rsoB00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.62 | 42.0 | 4.08e-01 | 71.4% | 67.9% |
| 3eefA00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.58 | 46.0 | 3.33e-01 | 95.9% | 83.7% |