small_capsid_protein

Euk-Vir

Equid_gammaherpesvirus_5

small_capsid_protein__YP_009118455__Equid_gammaherpesvirus_5__10371

Identity

58.0 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Equid_gammaherpesvirus_5

TaxID: 10371

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-84

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06112.17 best	Herpes_capsid	40.3	5.30e-10	100.0%	29.1%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3pm6A00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.77	62.0	3.89e-01	90.4%	89.2%
1xl3C00	1.20.1280.80	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.74	57.0	4.77e-01	84.6%	54.9%
2yfaA02	1.20.1440.210	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.70	57.0	4.33e-01	88.5%	44.8%
6lumD01	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.67	54.0	4.20e-01	94.2%	86.4%
4c3eM00	1.20.120.1350	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain	0.65	51.0	3.63e-01	86.5%	47.1%
4k3bA04	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.64	49.0	4.31e-01	84.6%	60.3%
7miqA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.61	46.0	3.70e-01	84.6%	45.5%
2x0kA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.50	39.0	2.73e-01	88.5%	73.1%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3482354	283.1.1.1 ↗	a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24	0.80	60.0	4.16e-01	80.8%	34.4%
3609066	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.78	53.0	3.99e-01	71.2%	39.1%
5009681	5069.1.1.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes	0.75	59.0	4.19e-01	82.7%	35.0%
1933311	3877.1.1.1 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP	0.63	44.0	4.74e-01	80.8%	100.0%
3205643	109.3.1.163 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5	0.61	48.0	2.85e-01	88.5%	11.4%
3732446	145.1.1.1 ↗	alpha arrays › F-box domain › F-box domain › F-box domain › F-box	0.58	45.0	4.82e-01	84.6%	100.0%