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small_capsid_protein

Euk-Vir

Macaca_nemestrina_herpesvirus_7

small_capsid_protein__YP_009253936__Macaca_nemestrina_herpesvirus_7__1846169

Identity

Accession:: YP_009253936 ↗
Protein ID:: small_capsid_protein
Kingdom:: euk

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› macacine_betaherpesvirus_9

TaxID: 1846169

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-86

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17086.11 best	HV_small_capsid	104.9	3.00e-30	92.7%	96.1%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1sigA00	1.10.601.10	Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor	0.68	59.0	4.06e-01	98.8%	45.2%
4ye6A01	1.10.8.1290	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1	0.61	44.0	4.10e-01	75.6%	59.6%
3dcfA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.55	43.0	3.64e-01	85.4%	97.9%
4i9oA00	1.10.246.20	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain	0.52	36.0	3.68e-01	72.0%	94.9%
6n59A01	3.10.20.740	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.51	39.0	3.45e-01	81.7%	90.2%
4tvvC00	3.90.190.10	Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily	0.50	35.0	2.44e-01	73.2%	26.1%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3586204	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.69	48.0	5.29e-01	72.0%	100.0%
3587541	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.62	45.0	4.40e-01	76.8%	85.6%
3342930	103.1.1.3 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N	0.62	47.0	4.91e-01	81.7%	89.3%
4032129	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.62	44.0	4.83e-01	74.4%	100.0%
3967034	601.3.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt	0.61	43.0	3.85e-01	73.2%	54.8%
4053952	3681.1.1.0 ↗	a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit	0.60	43.0	4.02e-01	78.0%	60.0%
3690723	3831.1.1.0 ↗	alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311	0.59	41.0	3.55e-01	95.1%	47.2%
3282226	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.57	41.0	3.89e-01	78.0%	69.5%
3386699	103.5.1.1 ↗	alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › PYC_OADA	0.56	42.0	3.85e-01	81.7%	80.9%
3810855	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.53	37.0	3.87e-01	72.0%	98.7%
3366463	622.4.1.36 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › DUF6857	0.51	45.0	3.41e-01	96.3%	82.5%