small_t_antigen

Euk-Vir

Bat_polyomavirus_6d

small_t_antigen__YP_009129301__Bat_polyomavirus_6d__1623686

Identity

87.1 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Bat_polyomavirus_6d

TaxID: 1623686

View cluster (116 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-65

PDB

Domain cluster: rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77

D2 high residues 78-163

PDB

Domain cluster: rep: small_T_antigen__YP_010087530__Alphapolyomavirus_aflavicollis__2170408__D83-188

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02380.21 best	Papo_T_antigen	75.1	5.70e-21	100.0%	91.4%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pf4F02	1.20.120.1860	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Small t-antigen, unique domain	0.85	79.0	7.85e-01	100.0%	95.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1177600	4162.1.1.1 ↗	few secondary structure elements › T-antigen specific domain-like › T-antigen specific domain-like › T-antigen specific domain-like › Papo_T_antigen	0.89	82.0	8.13e-01	100.0%	94.3%
3444757	130.1.1.0 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif	0.53	29.0	3.47e-01	89.5%	83.3%
3598697	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	39.0	3.15e-01	83.7%	72.6%
5000719	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.50	37.0	3.82e-01	100.0%	85.0%