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small_t_antigen
Euk-VirSorex_minutus_polyomavirus_1
small_t_antigen__YP_010084752__Sorex_minutus_polyomavirus_1__2560771
Identity
- Accession:
- YP_010084752 ↗
- Protein ID:
- small_t_antigen
- Kingdom:
- euk
Quality
81.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Sepolyvirales›
Polyomaviridae›
Alphapolyomavirus›
Sorex_minutus_polyomavirus_1
TaxID: 2560771
Cluster
View cluster (116 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-70
Domain cluster:
rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77
D2
high
residues 78-182
Domain cluster:
rep: small_T_antigen__YP_010087530__Alphapolyomavirus_aflavicollis__2170408__D83-188
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02380.21 best | Papo_T_antigen | 65.9 | 4.20e-18 | 88.6% | 92.5% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pf4F02 | 1.20.120.1860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Small t-antigen, unique domain | 0.89 | 70.0 | 7.62e-01 | 90.5% | 96.6% |
| 3ivpD01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 36.0 | 4.05e-01 | 89.5% | 92.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1177600 | 4162.1.1.1 ↗ | few secondary structure elements › T-antigen specific domain-like › T-antigen specific domain-like › T-antigen specific domain-like › Papo_T_antigen | 0.89 | 71.0 | 7.73e-01 | 90.5% | 98.9% |
| 3724977 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.58 | 34.0 | 3.52e-01 | 73.3% | 61.1% |
| 3387060 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.53 | 40.0 | 3.85e-01 | 84.8% | 70.8% |
| 3950076 | 1075.3.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1+BPD_transp_1_N | 0.52 | 36.0 | 2.56e-01 | 84.8% | 23.4% |