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sod

Euk-Vir

Catopsilia_pomona_nucleopolyhedrovirus

sod__YP_009255364__Catopsilia_pomona_nucleopolyhedrovirus__1850906

Identity

Accession:
YP_009255364 ↗
Protein ID:
sod
Kingdom:
euk

Quality

89.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Catopsilia_pomona_nucleopolyhedrovirus

TaxID: 1850906

Cluster

View cluster (67 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-39_83-105
PDB
Domain cluster: rep: Cu_Zn_superoxide_dismutase__YP_008003543__Mythimna_separata_entomopoxvirus_L__1293572__D1-37_83-101
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bd4A00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.90 84.0 6.82e-01 100.0% 69.7%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.74 59.0 6.02e-01 100.0% 89.8%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.73 58.0 5.82e-01 93.5% 84.1%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.70 55.0 4.17e-01 93.5% 37.7%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 50.0 5.12e-01 95.2% 85.0%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 49.0 3.78e-01 93.5% 34.5%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 57.0 4.03e-01 100.0% 77.3%
3el6A00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.62 51.0 3.40e-01 95.2% 45.8%
2q2eB05 2.60.40.2960 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 46.0 4.16e-01 85.5% 83.5%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.60 50.0 4.40e-01 96.8% 62.6%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 50.0 3.70e-01 95.2% 37.0%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 51.0 3.88e-01 96.8% 47.9%
4qqsB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 49.0 3.21e-01 98.4% 29.4%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.28e-01 95.2% 89.9%
2k78A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 3.98e-01 100.0% 93.7%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 48.0 3.73e-01 95.2% 72.7%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.57 44.0 3.46e-01 95.2% 38.6%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.56 45.0 4.10e-01 93.5% 65.5%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 47.0 3.78e-01 96.8% 47.2%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.58e-01 82.3% 100.0%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.55e-01 100.0% 70.0%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.50 37.0 3.17e-01 83.9% 86.0%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.50 42.0 3.57e-01 100.0% 56.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4201293 11.1.3.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › Sod_Cu 0.97 93.0 6.63e-01 100.0% 68.0%
3328167 11.1.1.635 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 0.71 61.0 4.94e-01 100.0% 100.0%
4827588 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.71 54.0 3.92e-01 95.2% 30.5%
3225807 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.69 60.0 4.65e-01 100.0% 62.9%
3536447 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.64 51.0 3.86e-01 95.2% 37.2%
5056218 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 42.0 4.06e-01 77.4% 61.4%
4966380 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.62 53.0 3.45e-01 95.2% 32.2%
3972681 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.61 53.0 4.60e-01 95.2% 68.1%
4978995 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.60 53.0 3.54e-01 100.0% 37.1%
4160858 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.59 51.0 3.91e-01 98.4% 74.5%
3426315 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 49.0 4.35e-01 93.5% 64.4%
3442710 3459.1.1.3 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.58 51.0 3.96e-01 100.0% 67.1%
3238811 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.57 50.0 3.20e-01 100.0% 20.6%
3200015 210.1.2.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT 0.54 45.0 3.36e-01 96.8% 58.8%
3169357 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 46.0 3.83e-01 95.2% 55.5%
3193923 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.74e-01 95.2% 32.9%
4047043 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.54 45.0 3.39e-01 95.2% 72.9%
4003675 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.53 41.0 2.49e-01 85.5% 24.8%
D2 medium residues 40-82_106-153
PDB
Domain cluster: rep: hypothetical_protein_FR483_N091R__YP_001425723__Paramecium_bursaria_Chlorella_virus_FR483__399781__D54-91_130-156
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00080.26 best Sod_Cu 62.0 1.10e-16 50.5% 32.3%
PF00080.26 Sod_Cu 40.2 6.10e-10 47.2% 27.8%