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spliced_replication-associated_protein

Euk-Vir

Dragonfly_associated_cyclovirus_3

spliced_replication-associated_protein__YP_009021846__Dragonfly_associated_cyclovirus_3__1234881

Identity

Accession:: YP_009021846 ↗
Protein ID:: spliced_replication-associated_protein
Kingdom:: euk

Quality

81.3 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Cirlivirales› Circoviridae› Cyclovirus› Dragonfly_associated_cyclovirus_3

TaxID: 1234881

Cluster

View cluster (107 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 196-247

PDB

Domain cluster: representative

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6denA03	3.40.50.970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains	0.68	57.0	3.80e-01	100.0%	71.5%
1m8pA03	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.65	54.0	3.84e-01	100.0%	46.7%
6b4kB02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.63	51.0	3.73e-01	100.0%	64.1%
2bvfA01	3.30.43.10	Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	0.61	44.0	3.98e-01	80.8%	54.4%
3n0aA01	3.90.190.10	Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily	0.60	48.0	3.51e-01	100.0%	68.0%
2nrhB02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.59	42.0	3.12e-01	78.8%	30.6%
4ot7A00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.59	44.0	2.84e-01	88.5%	58.8%
2f00A01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.59	49.0	4.27e-01	100.0%	87.5%
3m1aJ00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.58	46.0	3.08e-01	100.0%	43.8%
6yj5q01	3.40.250.10	Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain	0.57	47.0	3.76e-01	100.0%	83.7%
2exrA01	3.30.43.10	Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	0.57	39.0	3.11e-01	75.0%	32.5%
7o62B01	3.40.50.450	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.57	47.0	3.46e-01	100.0%	35.6%
2b4aA00	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.56	45.0	3.69e-01	100.0%	56.9%
2g6zA00	3.90.190.10	Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily	0.56	44.0	3.43e-01	100.0%	70.7%
2j48A00	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.54	43.0	3.52e-01	100.0%	58.0%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3588918	2004.1.1.120 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII	0.64	53.0	3.73e-01	100.0%	57.4%
4973244	2004.1.1.97 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB	0.62	51.0	3.75e-01	100.0%	90.8%
4967749	2004.1.1.97 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB	0.60	48.0	3.71e-01	100.0%	87.9%
3226345	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.59	46.0	3.70e-01	94.2%	85.0%
4197479	2007.1.1.11 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › Peptidase_C26	0.57	47.0	3.20e-01	100.0%	35.3%
3282326	217.1.1.2 ↗	a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4	0.57	42.0	2.99e-01	80.8%	35.3%
5060288	7516.1.1.24 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3	0.55	44.0	3.17e-01	100.0%	68.7%
3256642	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.55	40.0	2.72e-01	82.7%	39.6%
5060496	281.1.1.2 ↗	a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › ThiP_synth	0.54	45.0	3.24e-01	100.0%	38.3%
3247132	2007.2.3.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II	0.54	40.0	2.86e-01	84.6%	35.6%
4856012	2007.1.2.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I	0.52	36.0	3.07e-01	76.9%	43.0%

D2 medium residues 31-124

PDB

Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02407.23 best	Viral_Rep	71.9	5.70e-20	91.5%	96.3%

D3 medium residues 133-173

PDB

Domain cluster: rep: putative_replication-associated_protein__YP_009506285__Bat_associated_cyclovirus_2__2050585__D108-147