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ssDNA_binding_protein

Euk-Vir

Condylorrhiza_vestigialis_MNPV

ssDNA_binding_protein__YP_009118586__Condylorrhiza_vestigialis_MNPV__1592576

Identity

Accession:
YP_009118586 ↗
Protein ID:
ssDNA_binding_protein
Kingdom:
euk

Quality

80.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Condylorrhiza_vestigialis_mutiple_nucleopolyhedrovirus

TaxID: 1592576

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-98
PDB
Domain cluster: rep: Single-stranded_DNA_binding_protein__YP_009666482__Lonomia_obliqua_multiple_nucleopolyhedrovirus__134394__D50-113
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6nplA01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.51 42.0 2.58e-01 98.5% 89.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1854660 7523.1.1.8 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.54 40.0 2.71e-01 81.5% 37.5%
4140476 577.1.1.1 ↗ alpha arrays › CRIB domain › CRIB domain › CRIB domain › PBD 0.52 31.0 3.03e-01 96.9% 52.0%
D2 high residues 101-219_236-303
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF04786.19 best Baculo_DNA_bind 113.7 1.40e-32 64.7% 48.6%
PF04786.19 Baculo_DNA_bind 74.1 1.70e-20 36.9% 27.5%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f6fB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 21.0 2.84e-01 87.7% 67.0%
1vdxA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.51 33.0 3.36e-01 72.7% 64.7%
4xsgB00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.51 31.0 3.06e-01 92.5% 55.1%
4xotA03 2.40.30.250 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 25.0 3.48e-01 77.0% 98.8%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4575287 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.62 28.0 3.54e-01 85.0% 69.0%
4032314 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 36.0 4.37e-01 95.2% 90.4%
4493293 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.61 28.0 3.60e-01 85.0% 71.8%
4313846 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.61 27.0 3.57e-01 84.5% 74.0%
4493480 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.60 27.0 3.53e-01 84.5% 74.0%
4227163 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.60 26.0 3.49e-01 84.0% 74.0%
4088621 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.60 27.0 3.53e-01 84.5% 73.3%
4336111 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 27.0 3.51e-01 84.5% 74.3%
3703910 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 27.0 3.29e-01 85.0% 63.2%
5012513 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 36.0 4.08e-01 100.0% 80.7%
4061385 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 26.0 3.43e-01 84.0% 72.4%
3356712 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 16.0 2.97e-01 83.4% 84.4%
4324097 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.58 25.0 3.38e-01 85.0% 74.0%
3738677 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.55 25.0 3.10e-01 84.5% 66.9%
4024275 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.55 24.0 3.05e-01 84.0% 66.1%
1420599 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.52 24.0 2.95e-01 80.2% 65.3%
3891158 1.1.7.90 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.52 31.0 3.91e-01 82.4% 97.4%