ssDNA_binding_protein

Euk-Vir

Agrotis_segetum_granulovirus

ssDNA_binding_protein__YP_009513113__Agrotis_segetum_granulovirus__10464

Identity

74.0 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Agrotis_segetum_granulovirus

TaxID: 10464

View cluster (35 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-45_90-132_167-295

PDB

Domain cluster: rep: DNA_binding_protein__YP_006908583__Epinotia_aporema_granulovirus__166056__D16-56_115-135_172-249_269-279

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04786.19 best	Baculo_DNA_bind	91.8	6.90e-26	63.3%	47.8%
PF04786.19	Baculo_DNA_bind	35.9	7.70e-09	36.1%	25.1%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1l0wA01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.54	27.0	3.47e-01	80.1%	84.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3517335	1.1.2.0 ↗	beta barrels › cradle loop barrel › RIFT-related › double psi	0.53	20.0	2.55e-01	80.6%	51.3%
3998374	883.1.1.1 ↗	a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP	0.52	26.0	2.64e-01	90.1%	45.5%
3584227	883.1.1.0 ↗	a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like	0.51	26.0	2.97e-01	90.1%	62.8%

D2 medium residues 46-89_133-166

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8amzS01	1.25.40.570	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.56	44.0	2.89e-01	89.7%	70.6%
2fokB01	3.90.241.10	Alpha Beta › Alpha-Beta Complex › FokI Restriction Endonuclease; Chain A, domain 1 › Foki Restriction Endonuclease, Chain A, domain 1	0.54	39.0	2.71e-01	78.2%	90.0%
2yzsA02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.51	44.0	3.14e-01	93.6%	32.0%
2mknA00	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.51	28.0	3.65e-01	84.6%	100.0%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3201582	101.1.2.22 ↗	alpha arrays › HTH › HTH › winged helix domain › PCI	0.58	31.0	2.55e-01	91.0%	29.3%
3719697	1021.1.1.0 ↗	a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases	0.56	35.0	3.02e-01	85.9%	41.7%
3201747	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	45.0	2.85e-01	93.6%	61.1%
4058345	3749.5.1.0 ↗	extended segments › 26S proteasome regulatory subunits C-terminal helices › 26S proteasome regulatory subunit RPN3 C-terminal helix › 26S proteasome regulatory subunit RPN3 C-terminal helix	0.54	27.0	2.46e-01	88.5%	34.5%
3595931	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.52	35.0	3.04e-01	70.5%	68.0%
3727822	7527.1.1.2 ↗	a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3	0.50	43.0	2.76e-01	96.2%	40.0%