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ss_dsDNA_binding_protein
Euk-VirEastern_grey_kangaroopox_virus
ss_dsDNA_binding_protein__YP_010085362__Eastern_grey_kangaroopox_virus__2042482
Identity
- Accession:
- YP_010085362 ↗
- Protein ID:
- ss_dsDNA_binding_protein
- Kingdom:
- euk
Quality
82.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Macropopoxvirus›
Eastern_grey_kangaroopox_virus
TaxID: 2042482
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 55-190
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04498.19 best | Pox_VP8_L4R | 172.8 | 1.20e-50 | 100.0% | 62.7% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hkvA00 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.54 | 44.0 | 3.92e-01 | 97.1% | 62.0% |
| 2wtpA00 | 2.60.40.2280 | Mainly Beta › Sandwich › Immunoglobulin-like › Heavy-metal resistance protein CzcE | 0.53 | 26.0 | 3.05e-01 | 86.8% | 65.6% |
| 2dm7A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 26.0 | 3.07e-01 | 93.4% | 68.2% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 24.0 | 3.15e-01 | 94.9% | 78.4% |
| 3b7yA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.50 | 25.0 | 2.49e-01 | 94.9% | 43.1% |
D2
medium
residues 191-245
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04498.19 best | Pox_VP8_L4R | 57.5 | 2.40e-15 | 100.0% | 24.9% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bkfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 45.0 | 3.93e-01 | 96.4% | 51.8% |
| 1wmhB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 42.0 | 3.72e-01 | 98.2% | 50.0% |
| 5hftD00 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.55 | 31.0 | 2.31e-01 | 92.7% | 18.8% |
| 5jeaD00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.53 | 45.0 | 3.04e-01 | 98.2% | 88.8% |
| 1yx1A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.51 | 38.0 | 2.50e-01 | 81.8% | 33.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4469646 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.62 | 47.0 | 2.95e-01 | 81.8% | 60.9% |
| 3608516 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.56 | 45.0 | 3.58e-01 | 92.7% | 60.0% |
| 3998667 | 4014.1.1.1 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV | 0.55 | 33.0 | 2.30e-01 | 87.3% | 15.9% |
| 3239998 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.55 | 42.0 | 2.48e-01 | 83.6% | 10.9% |
| 4030581 | 2498.5.1.1 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 | 0.54 | 39.0 | 2.43e-01 | 80.0% | 59.4% |
| 4878688 | 4.6.1.1 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.53 | 39.0 | 2.65e-01 | 83.6% | 29.0% |
| 3724140 | 109.3.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_5 | 0.52 | 38.0 | 2.52e-01 | 85.5% | 41.7% |
| 4934465 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.52 | 40.0 | 2.65e-01 | 87.3% | 84.2% |
| 3890041 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.52 | 34.0 | 2.74e-01 | 89.1% | 33.6% |
| 4518250 | 109.4.1.1660 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27570 | 0.51 | 41.0 | 2.47e-01 | 87.3% | 28.7% |
| 3595399 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.50 | 39.0 | 2.63e-01 | 90.9% | 47.2% |