ssb

Euk-Vir

Trichoplusia_ni_granulovirus_LBIV-12

ssb__YP_009506152__Trichoplusia_ni_granulovirus_LBIV-12__1916701

Identity

81.7 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Trichoplusia_ni_granulovirus_LBIV-12

TaxID: 1916701

View cluster (35 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-82_166-208_226-244_265-277

PDB

Domain cluster: rep: DNA_binding_protein__YP_006908583__Epinotia_aporema_granulovirus__166056__D16-56_115-135_172-249_269-279

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04786.19 best	Baculo_DNA_bind	35.8	8.20e-09	57.8%	19.4%

D2 medium residues 83-165_209-225_245-264

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04786.19 best	Baculo_DNA_bind	73.2	3.20e-20	72.5%	32.0%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1h54A03	2.60.420.10	Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3	0.59	22.0	2.85e-01	74.2%	56.8%
3dxpA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.51	27.0	3.03e-01	81.7%	65.6%
2ahoB01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.50	28.0	3.33e-01	81.7%	81.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5014684	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.65	24.0	3.34e-01	95.0%	65.5%
5017700	2484.1.1.18 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1	0.53	37.0	2.75e-01	73.3%	59.0%
4092728	75.1.1.1 ↗	beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase	0.51	39.0	3.28e-01	80.8%	93.8%